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morphtrack

track cell morphology dynamics

mps

mps - 3D fluid dynamics solver by using moving particle semi implicit(MPS) method with OpenMP.

mst

A toolbox for spectral compressive imaging reconstruction including our MST (CVPR 2022), CST (ECCV 2022), DAUHST (NeurIPS 2022), HDNet (CVPR 2022), MST++ (CVPRW 2022), etc.

nafnet

The state-of-the-art image restoration model without nonlinear activation functions.

niddl

Deep denoising pushes the limit of functional data acquisition by recovering high SNR calcium traces from low SNR videos acquired using low laser power or smaller exposure time. Thus deep denoising enables faster and longer volumetric recordings.

niftyreg

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities

octava

OCTAVA is an open-source software for computational analysis of optical coherence tomography angiography images

openmps

Open source implemention of Moving Particle Semi-implcit (MPS) method

openrbc

A lipid-resolution molecular dynamics simulator of human red blood cells

optofluids

Fully-interferometric Mie-theory code which computes the scattering of a (laser) beam of coherent light of an ensemble of spherical particles; plus related scripts.

overexposurelscicompensation

Correction of overexposure in laser speckle contrast imaging. The code is part of the manuscript submitted to Optical Publishing Group (OSA) Optics Epress under the Manuscript Submission ID #451611. All rights are reserved.

particle-tracking-velocimetry

pd-denoising-pytorch

Code of 'when AWGN-based Denoiser Meets Real Noises'

peace_speckle

Physics Enhanced AutoCorrelation based Estimator (PEACE) for Speckle analysis to extract PSD from powders

pinns

Physics Informed Deep Learning: Data-driven Solutions and Discovery of Nonlinear Partial Differential Equations

pivlab

Particle Image Velocimetry for Matlab, official repository

polyp-pvt

Polyp-PVT: Polyp Segmentation with Pyramid Vision Transformers, AIR 2023.

pylsci

Python Package for Laser Speckle Contrast Imaging

python

All Algorithms implemented in Python

python_for_microscopists

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

pytorch-handbook

pytorch handbook是一本开源的书籍，目标是帮助那些希望和使用PyTorch进行深度学习开发和研究的朋友快速入门，其中包含的Pytorch教程全部通过测试保证可以成功运行

quicklook

Bring macOS “Quick Look” feature to Windows

rddcnn

A robust deformed CNN for image denoising (CAAI Transactions on Intelligence Technology,2022)

sihr

Fast/non-data-aided single image highlight removal methods in MATLAB/GNU Octave

simpac-2022-96

Moving Particle Semi-implicit (MPS) method with Polygon or Particle wall. C++/OpenMP code for physical simulation of fluid with presence of free surface

single_cell_blood_flow

This code is associated with the paper from Joseph et al., "Imaging single-cell blood flow in the smallest to largest vessels in the living retina". eLife, 2019. http://dx.doi.org/10.7554/eLife.45077 . Made available here is an analysis pipeline for measuring diameter and single-cell velocity of blood cells from space-time images captured with an a

speckle

Laser speckle contrast imaging

speckledynamicsmodelfitting

speckles-classification

Photonic Human Identification based on Deep Learning of Back Scattered Laser Speckle Patterns

srcorvisst

A ConrvisST image super-resolution reconstruction method