Comments (2)
prepare_transcripts这一步用gencode.lncRNA.gtf生成的文件中,cds文件就已经是空的了,后续用metaplots直接报错no orf出不了结果了
上面是lncRNA的gtf生成的,下面是完整gtf生成的
您好,请问您解决了吗?我遇到了同样的问题。
from ribocode.
prepare_transcripts这一步用gencode.lncRNA.gtf生成的文件中,cds文件就已经是空的了,后续用metaplots直接报错no orf出不了结果了
上面是lncRNA的gtf生成的,下面是完整gtf生成的
您好,请问您解决了吗?我遇到了同样的问题。
得用全转录本,lncRNA没有CDS注释的
from ribocode.
Related Issues (20)
- Whether multiple mapping affect ribocode result HOT 1
- error in metaplots step HOT 1
- 请问关于ORF预测结果中‘Psites_frame0_RPKM’代表什么意思? HOT 4
- Empty "transcripts_cds.txt" file HOT 1
- remove PCR duplicate HOT 2
- TypeError: '<' not supported between instances of 'str' and 'NoneType' HOT 2
- Question on adjusted P values reported in collapsed output HOT 2
- different transcripts of one gene
- ModuleNotFoundError: No module named 'fasta' HOT 6
- ValueError: unsupported pickle protocol: 5 in metaplots HOT 1
- psites_number table is not generated with v1.2.15
- Error, the references in bam are different from transcriptome annotation
- h5py TypeError: No conversion path for dtype: dtype('<U18')
- RiboCode nf-core module
- Incorrect handling of hdf5 file for repeated runs of RiboCode
- No R script supp
- No obviously periodicity are detected from bam file when running metaplots step
- Question on handling multimappers HOT 1
- metaplot import error Python 3.10
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