Comments (8)
See wiki page Updating coords for an assessment of potential impact on dependent packages.
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- TODO: add an FAQ entry documenting this change, the warning, and how to silence it.
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Email sent to 49 maintainers of reverse dependencies.
Delivery failures for EFS (Ursula Neumann, mailbox quota exceeded), blkbox (Boris Guennewig, 550 Address rejected), and sambia (Norbert Krautenbacher, 550 Recipient address rejected).
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4 emails and 2 PR sent to authors of packages found using coords
:
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Email sent now to 57 reverse depends/imports (5 delivery failures) and 21 reverse suggests (1 delivery failure).
Reminder diff sent to Colin Tredoux (r4lineups) and bug report for biomod2 (bug #6650), which are the last 2 packages detected as impacted that haven't been fixed yet.
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The coords function now uses a data.frame internally too. Following Tibble's Overview, I dropped row names which are sometimes duplicated, and turned off dropping dimensions by default. This required some adaptation of the tests and examples.
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The use of a data.frame internally came with a significant performance hit (apparently related to row indexing/updating operations, which are used a lot here). CI operations became unacceptably slow. Reverted to use matrix internally and added an as.matrix option, used in CI. Still defaults to returning a data.frame, but conversion happens in the end.
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pROC 1.16.0 is on CRAN with transpose = FALSE by default.
Closing, future changes to remove the warning (probably in ~ 1 year) and potentially drop transpose = TRUE altogether will go to new issues.
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Related Issues (20)
- ggroc.list parameter legacy.axes break HOT 2
- One-sided CIs for AUCs HOT 2
- Averaging 10 ROC curves HOT 4
- How to print the threshold without specificity and sensitivity HOT 2
- Cannot create a roc curve with a formula and a with clause HOT 2
- CRAN submission failed with new message Apparent methods for exported generics not registered
- Fix warning: `aes_string()` was deprecated in ggplot2 3.0.0 HOT 1
- Move aes_string() to aes() HOT 1
- Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. HOT 1
- The `path` argument of `expect_doppelganger()` is deprecated as of vdiffr 1.0.0. HOT 1
- Uncaught warnings in tests HOT 1
- Support for spaces in column names with formula
- A non-monotonic ROC is being produced by ggroc HOT 2
- Obuchowski and McClish (1997) sample size calculation incorrect HOT 6
- Mean ROC curve in ggroc() HOT 5
- pROC, detectable AUC HOT 2
- What does "direction" mean in roc function HOT 3
- Default method parameter in ci.auc function is different from documentation HOT 1
- Example for AUPRC with confidence interval HOT 1
- Incorrect AUC value and CI [bug] HOT 5
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