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UnixJunkie avatar UnixJunkie commented on June 20, 2024

cf. over there for more such examples
https://gist.github.com/UnixJunkie/d38de911f7fac31aca48651c8684d1de

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xrobin avatar xrobin commented on June 20, 2024

The value of AUC is obviously correct.

With the dataset you provided in score_labels.txt:

> roc_curve <- roc(df, "labels", "scores")
Setting levels: control = 0, case = 1
Setting direction: controls > cases
> auc(roc_curve)
Area under the curve: 0.6789
> ci.auc(roc_curve)
95% CI: 0.6382-0.7196 (DeLong)

If you have prior knowledge of which group has higher values of the predictor, you should change the direction argument to match.

> roc_curve <- roc(df, "labels", "scores", direction = "<")
Setting levels: control = 0, case = 1
> auc(roc_curve)
Area under the curve: 0.3211
> ci.auc(roc_curve)
95% CI: 0.2804-0.3618 (DeLong)

See ?roc for more details.

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UnixJunkie avatar UnixJunkie commented on June 20, 2024

That's very dangerous this direction parameter.
The default behavior is not right all the time.

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xrobin avatar xrobin commented on June 20, 2024

There's no default that will be right all the time - otherwise there would be no need for a parameter in the first place.

This behavior is documented in ?roc, in FAQs and extensively in forums/stackoverflow. Output is created to communicate about the decision transparently.

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UnixJunkie avatar UnixJunkie commented on June 20, 2024

Funnily, the python CROC package never gets the AUC wrong...

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