xjyx Goto Github PK

the-art-of-command-line

Master the command line, in one page

the-art-of-programming-by-july

本项目曾冲到全球第一，干货集锦见本页面最底部，另完整精致的纸质版《编程之法：面试和算法心得》已在京东/当当上销售

thefuck

Magnificent app which corrects your previous console command.

tidal

Transposon Insertion and Depletion AnaLyzer

tophat

Spliced read mapper for RNA-Seq

tpmcalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

training-modules

Materials for short, half-day workshops

training_book

transcriptclean

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

transcriptomeassemblytools

A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assemblies.

treeshapedrearrangements

Code and data from Koche et al. (under review)

trimgalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

tutorials

Tutorials covering various topics in genomic data analysis.

tx_annotation

Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation"

txtprocessing

deal with txt files including create, delete, divide, read, etc.

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

unicycler

hybrid assembly pipeline for bacterial genomes

uorfs

ushuffle

A useful tool for shuffling biological sequences while preserving the k-let counts

ustc-cs-courses-resource

:heart:**科学技术大学计算机学院课程资源(https://mbinary.xyz/ustc-cs/)

utils

General utilities/ convenience scripts useful for munging genomic data.

vagrent

A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences

velvet

Short read de novo assembler using de Bruijn graphs

venndetail

VennDetail: a bioconductor package for VennDiagram visualization and details extraction

viennarna

The ViennaRNA Package

vplotr

R package to easily generate "V-plots" of paired-end sequencing data over regions of interest

vscode

Visual Studio Code

wasp

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

worm-rna_from_science_paper

The C. elegans transcriptome at single cell resolution