xiaojieqiu Goto Github PK

pysmfish

Analysis of smFISH data

pysr

Simple symbolic regression in Julia+Python via regularized evolution and simulated annealing

pytorch_geometric

Graph Neural Network Library for PyTorch

qiu_lab_website

The source code for the Qiu lab website (based on ato-neulab)

raceid

randomized_nonlinear_component_analysis

Paper and code for "Randomized Nonlinear Component Analysis", ICML 2014

rccm

Convergent Cross Mapping R package

rhdf5lib

rjmcmc

RJMCMC

rna-seq-analysis

rosetta_clone_tools

A public repository with scripts and tools for cloning and setting up RosettaCommons repositories.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scater

Single cell analysis tools for expression from RNA-seq in R

sclvm

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

scns-toolkit

Single cell network synthesis toolkit

scrna-seq_papers

A list of single-cell RNA-Seq papers from our reading group

scuba

simlr

Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch)

simupy

A framework for modeling and simulating dynamical systems

singlecellseq

spatial_transcriptomics_heart

high level analysis of spatial transcriptomics 3D data

spoon-knife

This repo is for demonstration purposes only.

st_analysis

A toolkit for visualisation and analysis of Spatial Transcriptomics datasets

st_viewer

A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

starfish

*fish -- a standardized analysis pipeline for image-based transcriptomics

starmap

Software for processing and analyzing STARmap experiments.

summarize-github--issue

Perform automatic summarization for GitHub Issues. The summarization is triggered when the user send the trigger word in the comment.

summarize-pull-request

Perform automatic code reviews for GitHub pull requests (PR). The review is triggered when a PR is created and is triggered again for every subsequent commit in the PR. It will review each commit in the PR.

tabula-py

Simple wrapper of tabula-java: extract table from PDF into pandas DataFrame

tiny_ml

numpy 实现的 周志华《机器学习》书中的算法及其他一些传统机器学习算法