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View Code? Open in Web Editor NEWA simple Python script to move your Anaconda base directory after installation with all created environements.
License: GNU General Public License v3.0
A simple Python script to move your Anaconda base directory after installation with all created environements.
License: GNU General Public License v3.0
Starting a jupyter notebook environment works but when it comes to start the kernel during the notebook session the error is:
[I 07:02:41.836 NotebookApp] Serving notebooks from local directory: /home/bauermeister/Notebooks
[I 07:02:41.836 NotebookApp] 0 active kernels
[I 07:02:41.836 NotebookApp] The Jupyter Notebook is running at: https://128.135.112.89:13232/
[I 07:02:41.836 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).
[E 07:02:50.344 NotebookApp] Failed to run command:
['/project/lgrandi/anaconda3/envs/pax_v6.8.0/bin/python', '-m', 'ipykernel', '-f', '/home/bauermeister/.local/share/jupyter/runtime/kernel-34c61760-8367-479b-afc8-8b17aa8308b5.json']
PATH='/project2/lgrandi/anaconda3/envs/pax_v6.8.0/bin:/project2/lgrandi/anaconda3/envs/pax_v6.8.0/bin:/project2/lgrandi/anaconda3/envs/pax_v6.8.0/bin:/project2/lgrandi/anaconda3/bin:/bin:/software/slurm-current-el7-x86_64/bin:/software/git-2.10-el7-x86_64/bin:/software/subversion-1.9.4-el7-x86_64/bin:/software/bin:/srv/adm/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/home/bauermeister/bin'
with kwargs:
{'stderr': None, 'cwd': '/home/bauermeister/Notebooks/Untitled Folder', 'start_new_session': True, 'stdin': -1, 'stdout': None}
[E 07:02:50.345 NotebookApp] Unhandled error in API request
Traceback (most recent call last):
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/notebook/base/handlers.py", line 503, in wrapper
result = yield gen.maybe_future(method(self, *args, **kwargs))
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1015, in run
value = future.result()
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/concurrent.py", line 237, in result
raise_exc_info(self._exc_info)
File "<string>", line 3, in raise_exc_info
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1021, in run
yielded = self.gen.throw(*exc_info)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/notebook/services/sessions/handlers.py", line 75, in post
type=mtype))
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1015, in run
value = future.result()
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/concurrent.py", line 237, in result
raise_exc_info(self._exc_info)
File "<string>", line 3, in raise_exc_info
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1021, in run
yielded = self.gen.throw(*exc_info)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/notebook/services/sessions/sessionmanager.py", line 79, in create_session
kernel_id = yield self.start_kernel_for_session(session_id, path, name, type, kernel_name)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1015, in run
value = future.result()
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/concurrent.py", line 237, in result
raise_exc_info(self._exc_info)
File "<string>", line 3, in raise_exc_info
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1021, in run
yielded = self.gen.throw(*exc_info)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/notebook/services/sessions/sessionmanager.py", line 92, in start_kernel_for_session
self.kernel_manager.start_kernel(path=kernel_path, kernel_name=kernel_name)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 1015, in run
value = future.result()
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/concurrent.py", line 237, in result
raise_exc_info(self._exc_info)
File "<string>", line 3, in raise_exc_info
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/tornado/gen.py", line 285, in wrapper
yielded = next(result)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/notebook/services/kernels/kernelmanager.py", line 87, in start_kernel
super(MappingKernelManager, self).start_kernel(**kwargs)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/jupyter_client/multikernelmanager.py", line 110, in start_kernel
km.start_kernel(**kwargs)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/jupyter_client/manager.py", line 243, in start_kernel
**kw)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/jupyter_client/manager.py", line 189, in _launch_kernel
return launch_kernel(kernel_cmd, **kw)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/site-packages/jupyter_client/launcher.py", line 123, in launch_kernel
proc = Popen(cmd, **kwargs)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/subprocess.py", line 859, in __init__
restore_signals, start_new_session)
File "/project2/lgrandi/anaconda3/envs/pax_v6.8.0/lib/python3.4/subprocess.py", line 1463, in _execute_child
raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: '/project/lgrandi/anaconda3/envs/pax_v6.8.0/bin/python'
[E 07:02:50.359 NotebookApp] {
"Content-Type": "application/json",
"Accept-Encoding": "gzip, deflate, br",
"Connection": "keep-alive",
"User-Agent": "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:69.0) Gecko/20100101 Firefox/69.0",
"X-Requested-With": "XMLHttpRequest",
"Referer": "https://128.135.112.89:13232/notebooks/Untitled%20Folder/Untitled.ipynb",
"Accept": "application/json, text/javascript, */*; q=0.01",
"Dnt": "1",
"Host": "128.135.112.89:13232",
"X-Xsrftoken": "2|ecf27338|2f00a95d786990c8a6648b766454de42|1568287877",
"Accept-Language": "en-US,en;q=0.5",
"Cookie": "_xsrf=2|ecf27338|2f00a95d786990c8a6648b766454de42|1568287877; username-128-135-112-89-13232=\"2|1:0|10:1568287885|29:username-128-135-112-89-13232|44:OTA4YWVlMmJjYzUzNDI0ZjhiYzZiNzhjNDI4YWE3MmI=|f42b9b403a12dde5ad889870b9f18384e87e3ca2f8dfea3d29c2a0b8a647f8f1\"",
"Content-Length": "107"
}
Re-installation of ipython-notebook is not successful.
Problem:
The python kernel overview for each environment has the old path information!
See: /path/to/new/installation/anaconda3/envs/<environment_name>/share/jupyter/kernels/python3/
Implement routine in AnacondaMover to change this too.
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