wisamreid Goto Github PK

mouse-bandit-behavior

code to run 2 armed bandit type mouse behavior where the mouse decides to poke in left or right port for reward

mouse-brain-decoding-calcium

Decoding images from calcium recordings using data from stringer et al. 2018.

mouse-wheel

Simple task training a head-fixed mouse to run on a wheel

mouse_bandit

modeling mouse behavior in a multi-armed bandit task as a Bayesian bandit

mril_codes

naomi-sim

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-aicsimageio

Multiple file format reading directly into napari using pure Python

napari-allencell-segmenter

A plugin that enables image segmentation provided by Allen Institute for Cell Science

napari-animated-gif-io-tiff

Open and save 3D image stacks as animated gifs in napari

napari-bacseg

napari-correct-drift

napari-plugin-alfa-cohort

Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration

napari-tracing

napari-train-cellpose

napari-training-course

Lectures for a napari training course

napari-workflows

napari_dpc_plugin

2D napari plugin for pDPC reconstruction, registering QPI image with fluorescence, and Cellpose segmentation

napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

nat

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

nbgrader

A system for assigning and grading notebooks

negativecalciumresponses

netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

neuclease

Tools for computing interactive "cleaves" of agglomerated neuron fragments from a DVID server.

neural-alignment

neural-assembly-detection

Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.

neural-processes

This repository contains notebook implementations of the following Neural Process variants: Conditional Neural Processes (CNPs), Neural Processes (NPs), Attentive Neural Processes (ANPs).

neural_testbed

neurites

Detection of synapses on apposing neurites (Williams lab)

neuro-astro-network-grayscale

Neuro-Astrocyte Network