willemwybo / neat Goto Github PK

/Users/admin/opt/miniconda3/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data'
  warnings.warn(msg)
/Users/admin/opt/miniconda3/lib/python3.7/distutils/dist.py:274: UserWarning: Unknown distribution option: 'install_requires'
  warnings.warn(msg)
running install
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.7
creating build/lib.macosx-10.9-x86_64-3.7/neat
copying neat/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat
creating build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/morphtree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/stree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/greenstree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/phystree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/sovtree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/compartmenttree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
copying neat/trees/netree.py -> build/lib.macosx-10.9-x86_64-3.7/neat/trees
creating build/lib.macosx-10.9-x86_64-3.7/neat/tools
copying neat/tools/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools
copying neat/tools/kernelextraction.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools
creating build/lib.macosx-10.9-x86_64-3.7/neat/tools/fittools
copying neat/tools/fittools/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools/fittools
copying neat/tools/fittools/histogramsegmentation.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools/fittools
copying neat/tools/fittools/zerofinding.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools/fittools
creating build/lib.macosx-10.9-x86_64-3.7/neat/tools/plottools
copying neat/tools/plottools/scalebars.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools/plottools
copying neat/tools/plottools/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat/tools/plottools
creating build/lib.macosx-10.9-x86_64-3.7/neat/channels
copying neat/channels/ionchannels.py -> build/lib.macosx-10.9-x86_64-3.7/neat/channels
copying neat/channels/channelcollection.py -> build/lib.macosx-10.9-x86_64-3.7/neat/channels
copying neat/channels/__init__.py -> build/lib.macosx-10.9-x86_64-3.7/neat/channels
copying neat/channels/writecppcode.py -> build/lib.macosx-10.9-x86_64-3.7/neat/channels
running build_ext
cythoning neat/tools/simtools/netsim.pyx to neat/tools/simtools/netsim.cpp
/Users/admin/opt/miniconda3/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /Users/admin/NEAT/neat/tools/simtools/netsim.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
building 'neat.netsim' extension
creating build/temp.macosx-10.9-x86_64-3.7
creating build/temp.macosx-10.9-x86_64-3.7/neat
creating build/temp.macosx-10.9-x86_64-3.7/neat/tools
creating build/temp.macosx-10.9-x86_64-3.7/neat/tools/simtools
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/admin/opt/miniconda3/include -arch x86_64 -I/Users/admin/opt/miniconda3/include -arch x86_64 -I/Users/admin/opt/miniconda3/lib/python3.7/site-packages/numpy/core/include -I/Users/admin/opt/miniconda3/include/python3.7m -c neat/tools/simtools/netsim.cpp -o build/temp.macosx-10.9-x86_64-3.7/neat/tools/simtools/netsim.o -w -O3 -std=gnu++11
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/admin/opt/miniconda3/include -arch x86_64 -I/Users/admin/opt/miniconda3/include -arch x86_64 -I/Users/admin/opt/miniconda3/lib/python3.7/site-packages/numpy/core/include -I/Users/admin/opt/miniconda3/include/python3.7m -c neat/tools/simtools/NETC.cc -o build/temp.macosx-10.9-x86_64-3.7/neat/tools/simtools/NETC.o -w -O3 -std=gnu++11
neat/tools/simtools/NETC.cc:41:39: error: implicit conversion from '_Complex double' to 'double' is not
      permitted in C++
        complex< double > one_c = 1.0 + 0.0i;
                                  ~~~~^~~~~~
neat/tools/simtools/NETC.cc:157:35: error: implicit conversion from '_Complex double' to 'double' is not
      permitted in C++
    complex< double > v_aux = 0.0 + 0.0i;
                              ~~~~^~~~~~
neat/tools/simtools/NETC.cc:180:39: error: implicit conversion from '_Complex double' to 'double' is not
      permitted in C++
        complex< double > one_c = 1.0 + 0.0i;
                                  ~~~~^~~~~~
neat/tools/simtools/NETC.cc:204:35: error: implicit conversion from '_Complex double' to 'double' is not
      permitted in C++
    complex< double > v_aux = 0.0 + 0.0i;
                              ~~~~^~~~~~
In file included from neat/tools/simtools/NETC.cc:1:
In file included from neat/tools/simtools/NETC.h:1:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/iostream:38:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/ios:216:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/__locale:15:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/string:500:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/string_view:176:
In file included from /Library/Developer/CommandLineTools/usr/include/c++/v1/__string:56:
/Library/Developer/CommandLineTools/usr/include/c++/v1/algorithm:2042:20: error: implicit conversion from
      'const _Complex double' to 'double' is not permitted in C++
        *__first = __value_;
                 ~ ^~~~~~~~
/Library/Developer/CommandLineTools/usr/include/c++/v1/algorithm:2051:18: note: in instantiation of
      function template specialization 'std::__1::__fill_n<std::__1::__wrap_iter<std::__1::complex<double>
      *>, long, _Complex double>' requested here
   return _VSTD::__fill_n(__first, __convert_to_integral(__n), __value_);
                 ^
/Library/Developer/CommandLineTools/usr/include/c++/v1/algorithm:2070:12: note: in instantiation of
      function template specialization 'std::__1::fill_n<std::__1::__wrap_iter<std::__1::complex<double>
      *>, long, _Complex double>' requested here
    _VSTD::fill_n(__first, __last - __first, __value_);
           ^
/Library/Developer/CommandLineTools/usr/include/c++/v1/algorithm:2078:12: note: in instantiation of
      function template specialization 'std::__1::__fill<std::__1::__wrap_iter<std::__1::complex<double>
      *>, _Complex double>' requested here
    _VSTD::__fill(__first, __last, __value_, typename iterator_traits<_ForwardIterator>::iterator_...
           ^
neat/tools/simtools/NETC.cc:63:5: note: in instantiation of function template specialization
      'std::__1::fill<std::__1::__wrap_iter<std::__1::complex<double> *>, _Complex double>' requested here
    fill(m_yc.begin(), m_yc.end(), 0.0 + 0.0i);
    ^
5 errors generated.
error: command 'gcc' failed with exit status 1```