Haskell program to create genome rearrangement distances from fastc input file.
Creates new POY-type "custom" alphabet file with associated "tcm" file containing distances.
Source files in src directory Test data files in testData Documentation in doc (to come)
Requires cabal and ghc
To build: cabal build
Usage : rearrangeDist inputFile method (breakpoint/inversion) topology (linear/circular) rearrangecost (integer) locusIndelcost (integer) fileStub