Phylogenetic analysis program for general data inclusing unaligned sequence data Instruction to compile poy5.1.2a Ward Wheeler Sept. 4, 2018

Citation: Wheeler, W. C., N. Lucaroni, L. Hong, L. M. Crowley, and A. Varón. 2015. POY version 5: Phylogenetic analysis using dynamic homologies under multiple optimality criteria. Cladistics 31:189-196.

Due to OCAML compiler changes only Ocaml 4.01.0 will work properly

Additional packages required: (for Ubuntu 18.04) sudo apt-get install lapack sudo apt-get install gfortran sudo apt-get install mpi (if you want parallel execution via MPI) sudo apt-get install zlib1gcd -dev

To compile with OCaml 4.01.0:

install POY package in PATH navigate to PATH/src make clean

./configure --enable-large-alphabets --enable-long-sequences --enable-unsafe --enable-likelihood --enable-interface=flat

for parallel add --enable-mpi CC=mpicc

ocamlbuild poy.native

binary in ./_build/poy.native