Comments (4)
Thank you so much~ The problem was solved!
My original code set idloc = 2, which end up with this error.
from ggir.
Hi, I cannot reproduce your error. Below I am including the script I have been using to test this functionality.
- Can you spot what you did differently?
- Are you trying to reprocess a previously processed dataset? If yes, what happens if you start in a new output folder reprocessing your files?
GGIR(mode = 1:6,
datadir = datadir, # defined before this call
idloc = 1, # study specific
outputdir = outputdir, # defined before this call
do.report = c(2, 4, 5),
do.parallel = TRUE,
overwrite = TRUE,
printsummary = TRUE,
desiredtz = "America/Halifax",
windowsizes = c(5, 60, 3600), # <= note, I use this to increase resolution of lux value
#=====================
# Part 2
#=====================
strategy = 1,
hrs.del.start = 0, hrs.del.end = 0,
maxdur = 100, includedaycrit = 16,
excludefirstlast = FALSE,
includenightcrit = 16,
winhr = c(5,10),
closedbout = FALSE,
epochvalues2csv = TRUE,
#=====================
# Part 3 + 4
#=====================
outliers.only = TRUE,
criterror = 0,
do.visual = TRUE,
#=====================
# Part 5
#=====================
threshold.lig = c(30), threshold.mod = c(100), threshold.vig = c(400),
boutcriter = 1,
boutcriter.in = 1, boutcriter.lig = 1, boutcriter.mvpa = 0.9,
boutdur.in = c(1,10,30),
boutdur.lig = c(1,10),
boutdur.mvpa = c(1),
save_ms5rawlevels = TRUE,
save_ms5raw_format = "RData",
save_ms5raw_without_invalid = FALSE,
part5_agg2_60seconds = TRUE,
frag.metrics = "all",
#=====================
# Part 6
#=====================
part6HCA = TRUE,
part6_threshold_combi = "30_100_400",
#=====================
# Visual report
#=====================
timewindow = c("WW"),
visualreport = TRUE)
from ggir.
Yes, I was trying to reprocess a previously processed dataset which finished previous 5 parts. It still worked when I set overwrite=F.
I want to know whether the argument closedbout = FALSE was deprecated already?
from ggir.
I want to know whether the argument closedbout = FALSE was deprecated already?
Yes, it has been deprecated
from ggir.
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from ggir.