Tool to convert Swagger configuration files to Bio.Tools input XML.
mvn clean install
mvn exec:java -Dexec.mainClass="nl.unimaas.bigcat.OntologiesMapTemplateBuilder"
The ontologies files are in resources/ontology.
E.g:
"symbol": "null"
annotated to
"symbol": {
"term": "Gene symbol",
"uri": "http://edamontology.org/data_1026"
}
mvn exec:java -Dexec.mainClass="nl.unimaas.bigcat.Convert2Biotools"
It will convert all .json files present in resources/input. The output files are in resources/output
The proposal can be found at https://github.com/bio-tools/Studentships/blob/master/openAPI.pdf