R This repository contains all scripts, documents, and data (of limited size) for this intership.
Corresponding Git repository on HPC is at rds-cew54-basis/Projects/Cytokine_Chemokine_Basis
- WorkProgress.MD describes the steps taken and scripts used in this project in the order of time. It will be updated regularly.
- Pre-work includes: selection of desired cytokine/chemokine datasets to use in basis construction; scripts to tidy up datasets;
- basis_building includes: creat manifest, compute shrinkage, PCA.
- basis_projection includes: external data reduction, projection, plot
- Thesis.pdf is the finalised MPhil thesis that summarised the findings of this internship project.