The codes should be run in MATLAB.

1. Run run_RF.m

2. Plot main results with plot_RF.m

G. Raszewski, T. Renger, Light Harvesting in Photosystem II Core Complexes Is Limited by the Transfer to the Trap:  Can the Core Complex Turn into a Photoprotective Mode? Journal of the American Chemical Society 130, 4431-4446 (2008).

T. Renger, Theory of excitation energy transfer: from structure to function. Photosynth Res 102, 471-485 (2009).

T. Renger, M. E. Madjet, A. Knorr, F. Müh, How the molecular structure determines the flow of excitation energy in plant light-harvesting complex II. J Plant Physiol 168, 1497-1509 (2011).