Package install fails for topicsmodels about heroku-buildpack-r HOT 23 CLOSED

ctm.c:29:25: error: gsl/gsl_rng.h: No such file or directory
ctm.c:30:28: error: gsl/gsl_vector.h: No such file or directory
ctm.c:31:28: error: gsl/gsl_matrix.h: No such file or directory

-----> Building runtime environment
=====> Downloading Buildpack: https://github.com/virtualstaticvoid/heroku-buildpack-r/
=====> Detected Framework: R
       Vendoring R 2.15.1
       Downloading and unpacking R binaries
       Executing init.r script

...

* installing *source* package 'topicmodels' ...
** package 'topicmodels' successfully unpacked and MD5 sums checked
** libs
ctm.c:29:25: error: gsl/gsl_rng.h: No such file or directory
ctm.c:30:28: error: gsl/gsl_vector.h: No such file or directory
ctm.c:31:28: error: gsl/gsl_matrix.h: No such file or directory
In file included from ctm.c:33:
...
make: *** [ctm.o] Error 1
ERROR: compilation failed for package 'topicmodels'

* installing *source* package 'topicmodels' ...
** package 'topicmodels' successfully unpacked and MD5 sums checked
** libs
ctm.c:29:25: error: gsl/gsl_rng.h: No such file or directory
ctm.c:30:28: error: gsl/gsl_vector.h: No such file or directory
ctm.c:31:28: error: gsl/gsl_matrix.h: No such file or directory
In file included from ctm.c:33:
gsl-wrappers.h:32: warning: type defaults to 'int' in declaration of 'gsl_vector'
gsl-wrappers.h:32: error: expected ';', ',' or ')' before '*' token
gsl-wrappers.h:33: error: expected ')' before '*' token
gsl-wrappers.h:34: error: expected ')' before '*' token
gsl-wrappers.h:35: warning: type defaults to 'int' in declaration of 'gsl_matrix'
...
ctm.c:224: error: 'llna_model' has no member named 'log_beta'
ctm.c:224: error: too many arguments to function 'printf_matrix'
make: *** [ctm.o] Error 1
ERROR: compilation failed for package 'topicmodels'

#
# Example R code to install packages
# See http://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages for details
#

###########################################################
# Update this line with the R packages to install:

my_packages = c("RJSONIO","RPostgreSQL","plyr","tm","XML","Snowball","slam","topicmodels")

###########################################################

install_if_missing = function(p) {
    if (p %in% rownames(installed.packages()) == FALSE) {
        install.packages(p, dependencies = TRUE)
    }
    else {
        cat(paste("Skipping already installed package:", p, "\n"))
    }
}
invisible(sapply(my_packages, install_if_missing))

$ ./install 
Initialized empty Git repository in ~/heroku-buildpack-r/buildpack/test/gsl/.git/
[master (root-commit) f8b840d] initial
 3 files changed, 41 insertions(+)
 create mode 100755 init.r
 create mode 100755 install
 create mode 100644 prog.r
Creating frozen-tundra-7336... done, stack is cedar
BUILDPACK_URL=https://github.com/virtualstaticvoid/heroku-buildpack-r.git#gsl2
http://frozen-tundra-7336.herokuapp.com/ | [email protected]:frozen-tundra-7336.git

Git remote heroku added
Counting objects: 5, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (4/4), done.
Writing objects: 100% (5/5), 890 bytes | 0 bytes/s, done.
Total 5 (delta 0), reused 0 (delta 0)

-----> Fetching custom git buildpack... done
-----> R app detected
       Vendoring R 2.15.1
       Downloading and unpacking R binaries
       Executing init.r script
trying URL 'http://cran.revolutionanalytics.com/src/contrib/RJSONIO_1.0-3.tar.gz'
Content type 'application/x-gzip' length 1171725 bytes (1.1 Mb)
opened URL
==================================================
downloaded 1.1 Mb

* installing *source* package 'RJSONIO' ...
** package 'RJSONIO' successfully unpacked and MD5 sums checked
** libs
In file included from libjson/Source/JSONAllocator.h:4,
                 from JSONAllocator.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONMemory.h:6,
                 from libjson/Source/JSONChildren.h:6,
                 from JSONChildren.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from JSONDebug.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from JSONIterators.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONMemory.h:6,
                 from JSONMemory.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from JSONNode.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from JSONNode_Mutex.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONPreparse.h:4,
                 from JSONPreparse.cpp:10:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONStream.h:4,
                 from JSONStream.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONValidator.h:4,
                 from JSONValidator.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from JSONWriter.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/JSONDefs.h:10,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/internalJSONNode.h:4,
                 from internalJSONNode.cpp:1:
libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from libjson/Source/../Source/JSONDefs.h:10,
                 from libjson/Source/../libjson.h:4,
                 from libjson.cpp:8:
libjson/Source/../Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
libjson/Source/../Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from ./libjson/Source/JSONDefs.h:10,
                 from ./libjson/libjson.h:4,
                 from Rlibjson.h:1,
                 from rlibjson.c:1:
./libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
./libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
In file included from ./libjson/Source/JSONDefs.h:10,
                 from ./libjson/libjson.h:4,
                 from Rlibjson.h:1,
                 from rparser.c:1:
./libjson/Source/../JSONOptions.h:120:1: warning: "JSON_STREAM" redefined
<command-line>: warning: this is the location of the previous definition
./libjson/Source/../JSONOptions.h:256:1: warning: "JSON_VALIDATE" redefined
<command-line>: warning: this is the location of the previous definition
installing to /app/vendor/R/lib64/R/library/RJSONIO/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (RJSONIO)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
also installing the dependency 'DBI'

trying URL 'http://cran.revolutionanalytics.com/src/contrib/DBI_0.2-7.tar.gz'
Content type 'application/x-gzip' length 194699 bytes (190 Kb)
opened URL
==================================================
downloaded 190 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/RPostgreSQL_0.4.tar.gz'
Content type 'application/x-gzip' length 477352 bytes (466 Kb)
opened URL
==================================================
downloaded 466 Kb

* installing *source* package 'DBI' ...
** package 'DBI' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'DBI'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (DBI)
* installing *source* package 'RPostgreSQL' ...
** package 'RPostgreSQL' successfully unpacked and MD5 sums checked
** libs
RS-PostgreSQL.c: In function 'RS_PostgreSQL_createDataMappings':
RS-PostgreSQL.c:446: warning: passing argument 1 of 'Rf_protect' from incompatible pointer type
installing to /app/vendor/R/lib64/R/library/RPostgreSQL/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'format' from package 'base' in package 'RPostgreSQL'
Creating a generic function for 'print' from package 'base' in package 'RPostgreSQL'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (RPostgreSQL)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
also installing the dependencies 'digest', 'stringr', 'evaluate', 'abind', 'testthat', 'foreach', 'doMC', 'itertools', 'iterators'

trying URL 'http://cran.revolutionanalytics.com/src/contrib/digest_0.6.4.tar.gz'
Content type 'application/x-gzip' length 79309 bytes (77 Kb)
opened URL
==================================================
downloaded 77 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/stringr_0.6.2.tar.gz'
Content type 'application/x-gzip' length 20636 bytes (20 Kb)
opened URL
==================================================
downloaded 20 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/evaluate_0.5.1.tar.gz'
Content type 'application/x-gzip' length 17396 bytes (16 Kb)
opened URL
==================================================
downloaded 16 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/abind_1.4-0.tar.gz'
Content type 'application/x-gzip' length 19642 bytes (19 Kb)
opened URL
==================================================
downloaded 19 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/testthat_0.7.1.tar.gz'
Content type 'application/x-gzip' length 26806 bytes (26 Kb)
opened URL
==================================================
downloaded 26 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/foreach_1.4.1.tar.gz'
Content type 'application/x-gzip' length 359347 bytes (350 Kb)
opened URL
==================================================
downloaded 350 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/doMC_1.3.1.tar.gz'
Content type 'application/x-gzip' length 153626 bytes (150 Kb)
opened URL
==================================================
downloaded 150 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/itertools_0.1-1.tar.gz'
Content type 'application/x-gzip' length 15595 bytes (15 Kb)
opened URL
==================================================
downloaded 15 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/iterators_1.0.6.tar.gz'
Content type 'application/x-gzip' length 287154 bytes (280 Kb)
opened URL
==================================================
downloaded 280 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/plyr_1.8.tar.gz'
Content type 'application/x-gzip' length 384462 bytes (375 Kb)
opened URL
==================================================
downloaded 375 Kb

* installing *source* package 'digest' ...
** package 'digest' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/digest/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (digest)
* installing *source* package 'stringr' ...
** package 'stringr' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (stringr)
* installing *source* package 'abind' ...
** package 'abind' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (abind)
* installing *source* package 'iterators' ...
** package 'iterators' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (iterators)
* installing *source* package 'plyr' ...
** package 'plyr' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/plyr/libs
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (plyr)
* installing *source* package 'evaluate' ...
** package 'evaluate' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (evaluate)
* installing *source* package 'foreach' ...
** package 'foreach' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (foreach)
* installing *source* package 'itertools' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (itertools)
* installing *source* package 'testthat' ...
** package 'testthat' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (testthat)
* installing *source* package 'doMC' ...
** package 'doMC' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (doMC)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
Warning: dependency 'Rgraphviz' is not available
also installing the dependencies 'slam', 'filehash', 'proxy', 'SnowballC', 'XML'

trying URL 'http://cran.revolutionanalytics.com/src/contrib/slam_0.1-30.tar.gz'
Content type 'application/x-gzip' length 41156 bytes (40 Kb)
opened URL
==================================================
downloaded 40 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/filehash_2.2-1.tar.gz'
Content type 'application/x-gzip' length 133446 bytes (130 Kb)
opened URL
==================================================
downloaded 130 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/proxy_0.4-10.tar.gz'
Content type 'application/x-gzip' length 61418 bytes (59 Kb)
opened URL
==================================================
downloaded 59 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/SnowballC_0.5.tar.gz'
Content type 'application/x-gzip' length 150561 bytes (147 Kb)
opened URL
==================================================
downloaded 147 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/XML_3.98-1.1.tar.gz'
Content type 'application/x-gzip' length 1582216 bytes (1.5 Mb)
opened URL
==================================================
downloaded 1.5 Mb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/tm_0.5-9.1.tar.gz'
Content type 'application/x-gzip' length 487072 bytes (475 Kb)
opened URL
==================================================
downloaded 475 Kb

* installing *source* package 'slam' ...
** package 'slam' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/slam/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (slam)
* installing *source* package 'filehash' ...
** package 'filehash' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/filehash/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (filehash)
* installing *source* package 'proxy' ...
** package 'proxy' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/proxy/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (proxy)
* installing *source* package 'SnowballC' ...
** package 'SnowballC' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/SnowballC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (SnowballC)
* installing *source* package 'XML' ...
** package 'XML' successfully unpacked and MD5 sums checked
rm: cannot remove `a.out.dSYM': Is a directory
** libs
EventParse.c: In function 'RS_XML_textHandler':
EventParse.c:419: warning: cast from pointer to integer of different size
NodeGC.c: In function 'R_xmlFreeDoc':
NodeGC.c:40: warning: cast from pointer to integer of different size
NodeGC.c: In function 'initDocRefCounter':
NodeGC.c:178: warning: assignment makes integer from pointer without a cast
NodeGC.c: In function 'incrementDocRefBy':
NodeGC.c:185: warning: cast from pointer to integer of different size
NodeGC.c: In function 'getNodeCount':
NodeGC.c:213: warning: cast from pointer to integer of different size
NodeGC.c: In function 'internal_incrementNodeRefCount':
NodeGC.c:229: warning: cast from pointer to integer of different size
NodeGC.c: In function 'R_getXMLRefCount':
NodeGC.c:240: warning: cast from pointer to integer of different size
NodeGC.c: In function 'checkDescendantsInR':
NodeGC.c:249: warning: cast from pointer to integer of different size
NodeGC.c: In function 'internal_decrementNodeRefCount':
NodeGC.c:269: warning: cast from pointer to integer of different size
NodeGC.c:307: warning: cast from pointer to integer of different size
NodeGC.c: In function 'clearNodeMemoryManagement':
NodeGC.c:385: warning: cast from pointer to integer of different size
XMLTree.c: In function 'R_createXMLNodeRefDirect':
XMLTree.c:1057: warning: cast from pointer to integer of different size
XMLTree.c: In function 'R_createXMLNodeRef':
XMLTree.c:1098: warning: cast from pointer to integer of different size
XMLTree.c:1099: warning: cast from pointer to integer of different size
XMLTree.c:1103: warning: assignment makes integer from pointer without a cast
XMLTree.c: In function 'R_xmlSearchNs':
XMLTree.c:1695: warning: comparison of distinct pointer types lacks a cast
installing to /app/vendor/R/lib64/R/library/XML/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'source' from package 'base' in package 'XML'
in method for 'xmlAttrsToDataFrame' with signature '"AsIs"': no definition for class "AsIs"
in method for 'readKeyValueDB' with signature '"AsIs"': no definition for class "AsIs"
in method for 'readSolrDoc' with signature '"AsIs"': no definition for class "AsIs"
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (XML)
* installing *source* package 'tm' ...
** package 'tm' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/tm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (tm)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
also installing the dependencies 'RWekajars', 'RWeka', 'rJava'

trying URL 'http://cran.revolutionanalytics.com/src/contrib/RWekajars_3.7.10-1.tar.gz'
Content type 'application/x-gzip' length 5751089 bytes (5.5 Mb)
opened URL
==================================================
downloaded 5.5 Mb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/RWeka_0.4-21.tar.gz'
Content type 'application/x-gzip' length 410287 bytes (400 Kb)
opened URL
==================================================
downloaded 400 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/rJava_0.9-5.tar.gz'
Content type 'application/x-gzip' length 567468 bytes (554 Kb)
opened URL
==================================================
downloaded 554 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/Snowball_0.0-10.tar.gz'
Content type 'application/x-gzip' length 283355 bytes (276 Kb)
opened URL
==================================================
downloaded 276 Kb

* installing *source* package 'rJava' ...
** package 'rJava' successfully unpacked and MD5 sums checked
** libs
Note: examples/rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: examples/rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
installing via 'install.libs.R' to /app/vendor/R/lib64/R/library/rJava
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (rJava)
* installing *source* package 'RWekajars' ...
** package 'RWekajars' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (RWekajars)
* installing *source* package 'RWeka' ...
** package 'RWeka' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (RWeka)
* installing *source* package 'Snowball' ...
** package 'Snowball' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (Snowball)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
also installing the dependencies 'bitops', 'RCurl', 'modeltools', 'lasso2', 'lda', 'OAIHarvester'

trying URL 'http://cran.revolutionanalytics.com/src/contrib/bitops_1.0-6.tar.gz'
Content type 'application/x-gzip' length 8734 bytes
opened URL
==================================================
downloaded 8734 bytes

trying URL 'http://cran.revolutionanalytics.com/src/contrib/RCurl_1.95-4.1.tar.gz'
Content type 'application/x-gzip' length 870915 bytes (850 Kb)
opened URL
==================================================
downloaded 850 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/modeltools_0.2-21.tar.gz'
Content type 'application/x-gzip' length 14794 bytes (14 Kb)
opened URL
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downloaded 14 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/lasso2_1.2-18.tar.gz'
Content type 'application/x-gzip' length 258765 bytes (252 Kb)
opened URL
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downloaded 252 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/lda_1.3.2.tar.gz'
Content type 'application/x-gzip' length 360892 bytes (352 Kb)
opened URL
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downloaded 352 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/OAIHarvester_0.1-6.tar.gz'
Content type 'application/x-gzip' length 216920 bytes (211 Kb)
opened URL
==================================================
downloaded 211 Kb

trying URL 'http://cran.revolutionanalytics.com/src/contrib/topicmodels_0.1-12.tar.gz'
Content type 'application/x-gzip' length 845348 bytes (825 Kb)
opened URL
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downloaded 825 Kb

* installing *source* package 'bitops' ...
** package 'bitops' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/bitops/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (bitops)
* installing *source* package 'modeltools' ...
** package 'modeltools' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'na.fail' from package 'stats' in package 'modeltools'
Creating a generic function for 'na.pass' from package 'stats' in package 'modeltools'
Creating a generic function for 'na.omit' from package 'stats' in package 'modeltools'
Creating a generic function from function 'MEapply' in package 'modeltools'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (modeltools)
* installing *source* package 'lasso2' ...
** package 'lasso2' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/lasso2/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (lasso2)
* installing *source* package 'lda' ...
** package 'lda' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/lda/libs
** R
** data
** demo
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (lda)
* installing *source* package 'RCurl' ...
** package 'RCurl' successfully unpacked and MD5 sums checked
** libs
curl.c: In function 'getCurlInfoElement':
curl.c:689: warning: call to '_curl_easy_getinfo_err_curl_slist' declared with attribute warning: curl_easy_getinfo expects a pointer to struct curl_slist * for this info
curl.c: In function 'R_curl_easy_setopt':
curl.c:169: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option
curl.c:171: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option
curl.c:179: warning: call to '_curl_easy_setopt_err_debug_cb' declared with attribute warning: curl_easy_setopt expects a curl_debug_callback argument for this option
curl.c:187: warning: call to '_curl_easy_setopt_err_write_callback' declared with attribute warning: curl_easy_setopt expects a curl_write_callback argument for this option
curl.c:194: warning: call to '_curl_easy_setopt_err_progress_cb' declared with attribute warning: curl_easy_setopt expects a curl_progress_callback argument for this option
myUTF8.c: In function 'StringValue':
myUTF8.c:284: warning: passing argument 1 of 'Rf_mkCharLenCE' from incompatible pointer type
installing to /app/vendor/R/lib64/R/library/RCurl/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'close' from package 'base' in package 'RCurl'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (RCurl)
* installing *source* package 'topicmodels' ...
** package 'topicmodels' successfully unpacked and MD5 sums checked
** libs
installing to /app/vendor/R/lib64/R/library/topicmodels/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (topicmodels)
* installing *source* package 'OAIHarvester' ...
** package 'OAIHarvester' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

* DONE (OAIHarvester)
Updating HTML index of packages in '.Library'
Making packages.html  ... done
       R 2.15.1 successfully installed
-----> Discovering process types
       Procfile declares types -> (none)

-----> Compiled slug size: 160.4MB
-----> Launching... done, v4
       http://frozen-tundra-7336.herokuapp.com deployed to Heroku

To [email protected]:frozen-tundra-7336.git
 * [new branch]      master -> master

Running `R --no-save` attached to terminal... up, run.6241
WARNING: ignoring environment value of R_HOME

R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows"
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> q()

var childProcess = require('child_process'),
    rserve;

rserve = childProcess.exec('R CMD Rserve --no-save', function (error, stdout, stderr) {
    if (error) {
        console.log(error.stack);
        console.log('Error code: '+error.code);
        console.log('Signal received: '+error.signal);
    }
    console.log('Child Process STDOUT: '+stdout);
    console.log('Child Process STDERR: '+stderr);
});