{impactr} Mechanical loading prediction through accelerometer data
Home Page: https://lveras.com/impactr/
License: Other
Hello, I'm Lucas, a brazilian software developer based in Portugal. I mainly work with web development and data science, and I'm always eager to learn new skills.
remove_nonwear() generates warnings when you try to save the non-wear plot into a file and the filename attribute of the impactr_data object has some special characters.
This is due to the fact that the pdf device opened to save the plot does not support some special characters and then throws the warning when it fails to convert them.
library(impactr)
# install_accdata()
d <- import_dataset("daily_acc_3d")
# Make the data smaller to the code run faster
d <- define_region(
d,
start_time = "2016-01-20 00:01:00",
end_time = "2016-01-20 23:59:59"
)
# Force the filename to have some special characters
attributes(d)$filename <- "Sáv"
invisible(remove_nonwear(d, save_plot = tempfile(fileext = ".pdf")))
#> Warning in title(...): conversion failure on 'Sáv' in 'mbcsToSbcs': dot
#> substituted for <cc>
#> Warning in title(...): conversion failure on 'Sáv' in 'mbcsToSbcs': dot
#> substituted for <81>
#> Warning in title(...): conversion failure on 'Sáv' in 'mbcsToSbcs': dot
#> substituted for <cc>
#> Warning in title(...): conversion failure on 'Sáv' in 'mbcsToSbcs': dot
#> substituted for <81>Created on 2022-01-20 by the reprex package (v2.0.1)
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.1.2 (2021-11-01)
#> os macOS Big Sur 10.16
#> system x86_64, darwin17.0
#> ui X11
#> language (EN)
#> collate en_GB.UTF-8
#> ctype en_GB.UTF-8
#> tz Europe/Lisbon
#> date 2022-01-20
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date lib source
#> accdata 0.1.0 2022-01-14 [1] local
#> backports 1.2.1 2020-12-09 [1] CRAN (R 4.1.0)
#> cli 3.1.0 2021-10-27 [1] CRAN (R 4.1.0)
#> crayon 1.4.2 2021-10-29 [1] CRAN (R 4.1.0)
#> digest 0.6.29 2021-12-01 [1] CRAN (R 4.1.0)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0)
#> evaluate 0.14 2019-05-28 [1] CRAN (R 4.1.0)
#> fansi 0.5.0 2021-05-25 [1] CRAN (R 4.1.0)
#> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0)
#> fs 1.5.2 2021-12-08 [1] CRAN (R 4.1.0)
#> generics 0.1.1 2021-10-25 [1] CRAN (R 4.1.1)
#> glue 1.6.0 2021-12-17 [1] CRAN (R 4.1.0)
#> highr 0.9 2021-04-16 [1] CRAN (R 4.1.0)
#> htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.1.0)
#> impactr * 0.4.0 2022-01-16 [1] CRAN (R 4.1.2)
#> knitr 1.36 2021-09-29 [1] CRAN (R 4.1.0)
#> lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.1.0)
#> lubridate 1.8.0 2021-10-07 [1] CRAN (R 4.1.0)
#> lvmisc 0.1.1 2021-04-05 [1] CRAN (R 4.1.0)
#> magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.1.0)
#> pillar 1.6.4 2021-10-18 [1] CRAN (R 4.1.0)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0)
#> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.1.0)
#> Rcpp 1.0.7 2021-07-07 [1] CRAN (R 4.1.0)
#> reprex 2.0.1 2021-08-05 [1] CRAN (R 4.1.0)
#> rlang 0.4.12 2021-10-18 [1] CRAN (R 4.1.0)
#> rmarkdown 2.11 2021-09-14 [1] CRAN (R 4.1.0)
#> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.0)
#> sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.1.0)
#> stringi 1.7.6 2021-11-29 [1] CRAN (R 4.1.0)
#> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.1.0)
#> styler 1.5.1 2021-07-13 [1] CRAN (R 4.1.0)
#> tibble 3.1.6 2021-11-07 [1] CRAN (R 4.1.0)
#> utf8 1.2.2 2021-07-24 [1] CRAN (R 4.1.0)
#> vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0)
#> withr 2.4.3 2021-11-30 [1] CRAN (R 4.1.0)
#> xfun 0.27 2021-10-18 [1] CRAN (R 4.1.0)
#> yaml 2.2.1 2020-02-01 [1] CRAN (R 4.1.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.1/Resources/libraryIt looks like the tests in this package are sensitive to the order of the attributes() in a tibble object, which has changed in tibble 3.1.4. Can you please confirm?
testthat::expect_equal() and testthat::expect_identical() handle this case automatically, but must be applied on the entire object.
testthat::expect_equal(
attributes(structure(list(), a = 1, b = 2)),
attributes(structure(list(), b = 2, a = 1))
)
#> Error: attributes(structure(list(), a = 1, b = 2)) not equal to attributes(structure(list(), b = 2, a = 1)).
#> Names: 2 string mismatches
#> Component 1: Mean relative difference: 1
#> Component 2: Mean relative difference: 0.5
testthat::expect_equal(
structure(list(), a = 1, b = 2),
structure(list(), b = 2, a = 1)
)Created on 2021-08-15 by the reprex package (v2.0.1)
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