aind2-dl's Issues
Packages missing in current linux-64 channels
- appnope 0.1.0 py35_0
- appscript 1.0.1 py35_0
- python.app 1.2 py35_4
- xlwings 0.10.2 py35_0
This is happening when creating the conda environment.
Can somebody help with this? I am on Ubuntu 15.04
Discrepancies in requirements and yaml files
I just forked and cloned this repo and created the conda environment per the readme.
I then launched the Student_Admissions.ipynb and the very first code block returned an error stating that there is no 'pandas' module.
Checking the aind-dl-windows.yml file, I see that there is nothing for pandas in the list, although it is in the requirements.txt list. Is there a way to load the requirements list that I missed? There are some other discrepancies as well.
If it's just adding the requirements specifications to the .yml file, should I make the changes and submit a pull request?
No module named ipykernel_launcher
On MacOs 10.13.1 with Anaconda 4.3.30 following the instructions in the README and starting the Student_admissions.ipynb results in the following errors:
[I 16:02:43.865 NotebookApp] Kernel started: c74c09fc-a801-47b0-93e3-c935b4ed4e2a
/Users/xyz/anaconda3/envs/aind-dl/bin/python: No module named ipykernel_launcher
[I 16:02:46.851 NotebookApp] KernelRestarter: restarting kernel (1/5)
/Users/xyz/anaconda3/envs/aind-dl/bin/python: No module named ipykernel_launcher
[I 16:02:49.861 NotebookApp] KernelRestarter: restarting kernel (2/5)
/Users/xyz/anaconda3/envs/aind-dl/bin/python: No module named ipykernel_launcher
[I 16:02:52.869 NotebookApp] KernelRestarter: restarting kernel (3/5)
/Users/xyz/anaconda3/envs/aind-dl/bin/python: No module named ipykernel_launcher
[W 16:02:54.235 NotebookApp] Timeout waiting for kernel_info reply from c74c09fc-a801-47b0-93e3-c935b4ed4e2a
[I 16:02:55.879 NotebookApp] KernelRestarter: restarting kernel (4/5)
WARNING:root:kernel c74c09fc-a801-47b0-93e3-c935b4ed4e2a restarted
/Users/omaerz/anaconda3/envs/aind-dl/bin/python: No module named ipykernel_launcher
[W 16:02:58.893 NotebookApp] KernelRestarter: restart failed
[W 16:02:58.894 NotebookApp] Kernel c74c09fc-a801-47b0-93e3-c935b4ed4e2a died, removing from map.
ERROR:root:kernel c74c09fc-a801-47b0-93e3-c935b4ed4e2a restarted failed!
[W 16:02:58.930 NotebookApp] Kernel deleted before session
[W 16:02:58.931 NotebookApp] 410 DELETE /api/sessions/85eeca73-09fa-4d0d-8b8d-307eaff1286a (::1) 4.99ms referer=http://localhost:8888/notebooks/Student_Admissions.ipynb
resolved packages not found
I am running ubuntu 16.04 when i create try to create an environment using says
conda env create -f requirements/aind-dl-mac-linux.yml
it gives
ResolvePackageNotFound:
appnope 0.1.0 py35_0
when i remove the package dependency from the yml file it gives me the same error for a few others
on removing all the error throwing dependencies it says
UnsatisfiableError: The following specifications were found to be in conflict:
jpeg 9b 0
qt 5.6.2 0 -> jpeg 8*
Use "conda info " to see the dependencies for each package.
feature request: Remove 'rank' 0 from Student_Admissions.ipynb
Remove the pointless 'rank 0' input feature
2. Process the data:
# remove rows with NANs or 'rank' = 0
data = data.dropna(0)
data = data[data['rank']>0]
...
4. Define the model architecture
...
model.add(Dense(128, activation='relu', input_shape=(6,)))
...
https://github.com/angelmtenor/aind2-dl/commit/c021afdd8c416bc91f1da1b8f5f9c4a9725e9212
Issue creating env on Linux
platform : linux-64
conda version : 4.3.29
conda-env version : 4.3.29
python version : 3.6.2.final.0
Running “conda env create -f requirements/aind-dl-linux.yml” from the README section for linux generates the following errors:
` Traceback (most recent call last):
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 497, in run_script
subprocess_call(command_args, env=env, path=dirname(path))
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/gateways/subprocess.py", line 56, in subprocess_call
output=_format_output(command_str, path, rc, stdout, stderr))
subprocess.CalledProcessError: Command '['/bin/bash', '-x', '/home/xyz/anaconda3/envs/aind-dl/bin/.rise-post-link.sh']' returned non-zero exit status 126.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 327, in _execute_actions
run_script(target_prefix, Dist(pkg_data), 'post-unlink' if is_unlink else 'post-link')
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 513, in run_script
raise LinkError(message)
conda.exceptions.LinkError: post-link script failed for package damianavila82::rise-4.0.0b1-py35_0
running your command again with `-v` will provide additional information
location of failed script: /home/xyz/anaconda3/envs/aind-dl/bin/.rise-post-link.sh
==> script messages <==
<None>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 281, in execute
pkg_data, actions)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 344, in _execute_actions
reverse_excs,
conda.CondaMultiError: post-link script failed for package damianavila82::rise-4.0.0b1-py35_0
running your command again with `-v` will provide additional information
location of failed script: /home/xyz/anaconda3/envs/aind-dl/bin/.rise-post-link.sh
==> script messages <==
<None>
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/exceptions.py", line 640, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda_env/cli/main_create.py", line 108, in execute
installer.install(prefix, pkg_specs, args, env)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda_env/installers/conda.py", line 37, in install
plan.execute_actions(actions, index, verbose=not args.quiet)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/plan.py", line 830, in execute_actions
execute_instructions(plan, index, verbose)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/instructions.py", line 247, in execute_instructions
cmd(state, arg)
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/instructions.py", line 108, in UNLINKLINKTRANSACTION_CMD
txn.execute()
File "/home/xyz/anaconda3/lib/python3.6/site-packages/conda/core/link.py", line 297, in execute
rollback_excs,
conda.CondaMultiError: post-link script failed for package damianavila82::rise-4.0.0b1-py35_0
running your command again with `-v` will provide additional information
location of failed script: /home/xyz/anaconda3/envs/aind-dl/bin/.rise-post-link.sh
==> script messages <==
<None>
`
Typo in Student_Admissions.pynd
In cell 4 in Student_Admissions.pynb, the last line is y = keras.utils.to_categorical_data. I believe it should be np_utils.to_categorical.
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.