Unable to see any outputs in Jupyter Notebook about manifold HOT 7 CLOSED

@spamula I cannot reproduce this error. Do you mind do a pip freeze to print out all the dependencies and check your browser console to see if there are any error messages?

Please also do a jupyter nbextension list.

from manifold.

@spamula try to enable the jupyter-js-widgets nbextension. It is a dependency.

from manifold.

I noticed that the Jupyter wrapper may have issues with the conda environment. I will look into this issue.

from manifold.

Hi @kenns29

Here's the pip freeze:

absl-py==0.5.0
addfips==0.2.2
affine==2.3.0
alabaster==0.7.12
alembic==1.0.5
amqp==2.3.2
anyconfig==0.9.7
apache-beam==2.15.0
apache-libcloud==2.5.0
aplus==0.11.0
arcgis==1.6.0
argh==0.26.2
arrow==0.12.1
asn1crypto==0.24.0
astor==0.7.1
astroid==2.2.5
astropy==3.1.2
atomicwrites==1.3.0
attrs==19.1.0
autopep8==1.3.5
avro-python3==1.9.1
azure-common==1.1.18
azure-storage-blob==1.5.0
azure-storage-common==1.4.0
Babel==2.6.0
backcall==0.1.0
backports.os==0.1.1
backports.shutil-get-terminal-size==1.0.0
beautifulsoup4==4.7.1
billiard==3.5.0.5
binaryornot==0.4.4
bitarray==0.8.3
bkcharts==0.2
blaze==0.10.1
bleach==3.1.0
bokeh==1.0.4
boto==2.49.0
boto3==1.9.103
botocore==1.12.103
Bottleneck==1.2.1
bqplot==0.11.6
branca==0.3.1
bz2file==0.98
CacheControl==0.12.5
cachetools==3.1.1
cchardet==2.1.4
celery==4.2.1
certifi==2019.3.9
cffi==1.12.2
chardet==3.0.4
cleanco==1.3
Click==7.0
click-plugins==1.0.4
cligj==0.5.0
cloudpickle==0.8.0
colorama==0.4.1
coloredlogs==10.0
colorlover==0.2.1
contextily==1.0rc2
contextlib2==0.5.5
convertdate==2.1.3
cookiecutter==1.6.0
crcmod==1.7
cryptography==2.6.1
cufflinks==0.14.6
cycler==0.10.0
cymem==1.31.2
Cython==0.29.11
cytoolz==0.9.0.1
dash==1.7.0
dash-core-components==1.6.0
dash-cytoscape==0.1.1
dash-daq==0.1.4
dash-html-components==1.0.2
dash-renderer==1.2.2
dash-table==4.5.1
dash-table-experiments==0.6.0
dask==1.2.2
datashape==0.5.2
dateparser==0.7.1
decorator==4.4.0
decore==0.0.1
defusedxml==0.6.0
Deprecated==1.2.5
descartes==1.1.0
dill==0.2.9
Distance==0.1.3
distributed==1.26.0
docopt==0.6.2
docutils==0.14
elasticsearch==6.3.1
eli5==0.8
entrypoints==0.3
enum34==1.1.6
ephem==3.7.6.0
et-xmlfile==1.0.1
ez-setup==0.9
fastavro==0.21.24
fastcache==1.0.2
fasteners==0.15
featuretools==0.13.0
filelock==2.0.13
Fiona==1.8.0
Flask==1.0.3
Flask-AppBuilder==1.12.2
Flask-Babel==0.12.2
Flask-Cache==0.13.1
Flask-Caching==1.4.0
Flask-Compress==1.4.0
Flask-Cors==3.0.8
Flask-Login==0.4.1
Flask-Migrate==2.3.1
Flask-OpenID==1.2.5
Flask-Script==2.0.6
Flask-SQLAlchemy==2.3.2
Flask-Testing==0.7.1
Flask-WTF==0.14.2
flower==0.9.2
fsspec==0.6.1
funcsigs==1.0.2
furl==2.0.0
future==0.16.0
fuzzywuzzy==0.16.0
gast==0.2.2
gcsfs==0.2.3
gekko==0.1rc3
gender-guesser==0.4.0
gensim==3.5.0
geographiclib==1.49
geojson==2.4.1
geopandas==0.5.1
geopy==1.18.1
gevent==1.4.0
gitdb2==2.0.5
GitPython==2.1.11
glob2==0.6
google-api-core==1.12.0
google-api-python-client==1.7.11
google-apitools==0.5.28
google-auth==1.6.3
google-auth-httplib2==0.0.3
google-auth-oauthlib==0.4.1
google-cloud-bigquery==1.16.0
google-cloud-bigtable==0.32.2
google-cloud-core==1.0.2
google-cloud-datastore==1.7.4
google-cloud-pubsub==0.39.1
google-cloud-storage==1.16.1
google-pasta==0.1.8
google-resumable-media==0.3.2
googleapis-common-protos==1.6.0
googlemaps==3.1.4
graphviz==0.13.2
greenlet==0.4.15
grpc-google-iam-v1==0.11.4
grpcio==1.15.0
gunicorn==19.9.0
h5py==2.9.0
hdbscan==0.8.15
hdfs==2.5.8
HeapDict==1.0.0
holidays==0.9.10
html5lib==1.0.1
httplib2==0.12.0
humanfriendly==4.18
humanize==0.5.1
hyperopt==0.1.2
icc-rt==2019.0
idna==2.8
ijson==2.3
imageio==2.5.0
imagesize==1.1.0
iml==0.6.0
importlib-metadata==0.0
intel-openmp==2019.0
ipydatawidgets==4.0.1
ipykernel==5.1.1
ipyleaflet==0.11.1
ipympl==0.3.3
ipython==7.5.0
ipython-genutils==0.2.0
ipyvolume==0.5.2
ipyvuetify==0.1.7
ipywebrtc==0.5.0
ipywidgets==7.5.1
iso3166==0.8
isodate==0.6.0
isort==4.3.16
itsdangerous==1.1.0
jdcal==1.4
jedi==0.13.3
jeepney==0.4
jellyfish==0.7.1
Jinja2==2.10.1
jinja2-time==0.2.0
jmespath==0.9.3
joblib==0.13.2
jsonlines==1.2.0
jsonmodels==2.4
jsonpickle==0.9.6
jsonschema==3.0.1
jupyter==1.0.0
jupyter-client==5.2.4
jupyter-console==6.0.0
jupyter-contrib-core==0.3.3
jupyter-contrib-nbextensions==0.5.0
jupyter-core==4.4.0
jupyter-highlight-selected-word==0.2.0
jupyter-latex-envs==1.4.4
jupyter-nbextensions-configurator==0.4.1
jupyterlab==0.35.4
jupyterlab-launcher==0.10.2
jupyterlab-server==0.2.0
jupyterthemes==0.20.0
kedro==0.14.1
keplergl==0.1.0a8
Keras-Applications==1.0.8
Keras-Preprocessing==1.1.0
keyring==19.0.1
kiwisolver==1.1.0
kmodes==0.9
kombu==4.2.2.post1
landsatxplore==0.0.5
lazy-object-proxy==1.3.1
lesscpy==0.13.0
libpagure==0.9
lightgbm==2.3.1
lime==0.1.1.34
linear-tsv==1.1.0
llvmlite==0.28.0
locket==0.2.0
lunardate==0.2.0
lxml==4.3.2
Mako==1.0.7
mapbox==0.18.0
Markdown==3.0.1
MarkupSafe==1.1.1
matplotlib==3.1.0
matplotlib-venn==0.11.5
mccabe==0.6.1
memory-profiler==0.54.0
mercantile==1.1.2
missingno==0.4.1
mistune==0.8.4
mkl==2019.0
mkl-fft==1.0.6
mkl-random==1.0.1.1
mlvis==0.0.9
mock==2.0.0
monotonic==1.5
more-itertools==7.0.0
mpmath==1.1.0
msgpack==0.6.1
multipledispatch==0.6.0
munch==2.3.2
murmurhash==0.28.0
mysql-connector==2.1.7
nameparser==0.5.7
nbconvert==5.5.0
nbformat==4.4.0
networkx==2.3
nltk==3.4
nose==1.3.7
notebook==5.7.8
ntlm-auth==1.2.0
numba==0.43.1
numexpr==2.6.9
numpy==1.17.4
numpydoc==0.8.0
oauth2client==4.1.3
oauthlib==3.0.1
odo==0.5.0
ogr==0.0.3
olefile==0.46
opt-einsum==3.1.0
orderedmultidict==1.0
packaging==19.0
pandas==0.25.3
pandas-gbq==0.10.0
pandocfilters==1.4.2
parso==0.4.0
partd==1.0.0
patsy==0.5.1
pbr==5.4.3
pdpipe==0.0.35
pexpect==4.7.0
pickleshare==0.7.5
Pillow==6.0.0
plotly==4.4.1
plotly-express==0.4.1
plotly-geo==1.0.0
pluggy==0.11.0
ply==3.11
polyline==1.3.2
poyo==0.4.1
probableparsing==0.0.1
progressbar2==3.42.0
prometheus-client==0.6.0
prompt-toolkit==2.0.9
protobuf==3.6.1
psutil==5.6.3
ptyprocess==0.6.0
py==1.8.0
pyarrow==0.12.0
pyasn1==0.4.5
pyasn1-modules==0.2.5
pycodestyle==2.5.0
pycparser==2.19
pydata-google-auth==0.1.3
pydot==1.4.1
pydotplus==2.0.2
PyGithub==1.43.5
Pygments==2.4.0
PyJWT==1.7.1
pymongo==3.9.0
PyOpenGL==3.1.0
pyparsing==2.4.0
pyproj==1.9.5.1
pyrsistent==0.15.2
pyshp==2.1.0
pystan==2.18.1.0
pytest==4.5.0
pytest-runner==4.4
python-crfsuite==0.9.6
python-dateutil==2.8.0
python-editor==1.0.3
python-gitlab==1.8.0
python-json-logger==0.1.9
python-utils==2.3.0
python3-openid==3.1.0
pythreejs==2.1.1
pytz==2019.1
PyWavelets==1.0.3
PyYAML==3.13
pyzmq==18.0.1
qtconsole==4.4.3
rasterio==1.1.1
recordlinkage==0.13.2
regex==2019.3.12
requests==2.22.0
requests-oauthlib==1.2.0
retrying==1.3.3
rsa==4.0
Rtree==0.8.3
s3fs==0.4.0
s3transfer==0.2.0
SALib==1.3.4
scikit-image==0.15.0
scikit-learn==0.21.1
scikit-plot==0.3.7
scipy==1.3.0
seaborn==0.9.0
SecretStorage==3.1.1
Send2Trash==1.5.0
setuptools-git==1.2
shap==0.29.1
Shapely==1.6.4.post2
singledispatch==3.4.0.3
six==1.12.0
sklearn==0.0
skope-rules==1.0.0
skutil==0.0.16
smart-open==1.9.0
smmap2==2.0.5
snowballstemmer==1.2.1
snuggs==1.4.7
sortedcontainers==2.1.0
soupsieve==1.8
Sphinx==1.8.5
sphinxcontrib-websupport==1.1.0
SQLAlchemy==1.3.5
statsmodels==0.10.2
strct==0.0.30
swifter==0.289
tables==3.5.1
tabulate==0.8.3
tbb==2019.0
tbb4py==2019.0
tblib==1.3.2
tensorboard==2.0.1
tensorflow==2.0.0
tensorflow-estimator==2.0.1
tensorflow-serving-api==2.0.0
termcolor==1.1.0
terminado==0.8.1
testpath==0.4.2
toolz==0.9.0
toposort==1.5
tornado==6.0.2
tqdm==4.32.1
traitlets==4.3.2
traittypes==0.2.1
typed-ast==1.3.1
typing==3.6.6
tzlocal==1.5.1
uritemplate==3.0.0
urllib3==1.25.2
usaddress==0.5.10
vaex==2.0.2
vaex-arrow==0.3.5
vaex-astro==0.5.0
vaex-core==0.9.2
vaex-hdf5==0.5.2
vaex-jupyter==0.3.0
vaex-ml==0.5.0
vaex-server==0.2.1
vaex-ui==0.2.2
vaex-viz==0.3.4
vine==1.1.4
watermark==1.8.1
wcwidth==0.1.7
webencodings==0.5.1
Werkzeug==0.15.4
whichcraft==0.4.1
widgetsnbextension==3.5.0
witwidget==1.5.0
wrapt==1.11.1
WTForms==2.2.1
xarray==0.12.3
xgboost==0.90
xlrd==1.2.0
XlsxWriter==1.1.5
yellowbrick==0.9.1
zict==0.1.4

The jupyter nbextension list is as below:

Known nbextensions:
config dir: /home/XXX.jupyter/nbconfig
notebook section
nbextensions_configurator/config_menu/main enabled
- Validating: problems found:
- require? X nbextensions_configurator/config_menu/main
contrib_nbextensions_help_item/main disabled
execute_time/ExecuteTime enabled
- Validating: OK
hide_input/main disabled
toc2/main enabled
- Validating: OK
code_prettify/autopep8 disabled
scratchpad/main disabled
snippets/main disabled
jupyter-webrtc/extension disabled
jupyter-matplotlib/extension disabled
jupyter-leaflet/extension disabled
ipyvolume/extension disabled
jupyter-vuetify/extension disabled
jupyter-js-widgets/extension disabled
jupyter-datawidgets/extension disabled
bqplot/extension disabled
arcgis/extension disabled
jupyter-threejs/extension disabled
plotlywidget/extension disabled
zenmode/main disabled
table_beautifier/main disabled
keplergl-jupyter/extension disabled
wit-widget/extension disabled
mlvis/extension enabled
- Validating: OK
tree section
nbextensions_configurator/tree_tab/main enabled
- Validating: problems found:
- require? X nbextensions_configurator/tree_tab/main
config dir: /home/XXX/floodenv/etc/jupyter/nbconfig
notebook section
bqplot/extension enabled
- Validating: OK
ipyvolume/extension enabled
- Validating: OK
jupyter-webrtc/extension enabled
- Validating: OK
jupyter-datawidgets/extension enabled
- Validating: OK
jupyter-leaflet/extension enabled
- Validating: OK
jupyter-matplotlib/extension enabled
- Validating: OK
jupyter-threejs/extension enabled
- Validating: OK
jupyter-vuetify/extension enabled
- Validating: OK
keplergl-jupyter/extension enabled
- Validating: OK
plotlywidget/extension enabled
- Validating: OK
jupyter-js-widgets/extension enabled
- Validating: OK
wit-widget/extension enabled
- Validating: OK
arcgis/extension enabled
- Validating: OK
mlvis/extension enabled
- Validating: OK

from manifold.

I'm not sure how I missed this with the install but got the jupyter-js-widgets set up and all working now @kenns29 thanks!

from manifold.

@spamula how did you do that?

from manifold.

Closing the issue since it is resolved.

from manifold.