ubamba98 / brain-segmentation Goto Github PK

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NameError                                 Traceback (most recent call last)

<ipython-input-9-66b3304bbf9c> in <module>()
     94     X_FLAIR_val = to_uint8(get_data(FLAIR_val))[None,None,...]
     95     X_IR_val = IR_to_uint8(get_data(IR_val))[None,None,...]
---> 96     y_val = np.array(get_data(segm_val)==CLASS).astype(np.uint8)[None,...]
     97     print("STARTING TRAINING...")
     98     model_ = model()

NameError: name 'CLASS' is not defined

LOADING DATA...

/usr/local/lib/python3.6/dist-packages/ipykernel_launcher.py:10: DeprecationWarning: get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).

* deprecated from version: 3.0
* Will raise <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0
  # Remove the CWD from sys.path while we load stuff.

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AttributeError                            Traceback (most recent call last)

<ipython-input-28-4ee8cd402a2d> in <module>()
     80     y = []
     81     for T1_,FLAIR_,IR_,seg_ in zip(T1path, FLAIRpath, IRpath, segpath):
---> 82         T1 = histeq(to_uint8(get_data_with_skull_scraping(T1_)))
     83         IR = IR_to_uint8(get_data(IR_))
     84         FLAIR = to_uint8(get_data(FLAIR_))

2 frames

/usr/local/lib/python3.6/dist-packages/deepbrain/extractor.py in load_pb(self)
     16 
     17     def load_pb(self):
---> 18         print(tf.__version__)
     19         graph = tf.Graph()
     20         print(tf.Session(graph=graph))

AttributeError: module 'tensorflow' has no attribute 'Session'