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twritemplates's Issues

v0.2.1 updates

To do:

  • slightly increase default font size for printed figures
  • can we set a default color?
  • add box plot legend function

Clean up documentation

Suggest breaking help pages into:

  • data
  • ggplot themes
  • palettes and scales
  • rmarkdown templates

Add example data

Add example datasets to facilitate examples used in the in-house r-manual.

  • Tres Palacios bacteria
  • Tres Palacios streamflow
  • Ogallala well TDS and Uranium (from Helsel and Hirsch)
  • Arroyo Colorado wetland TSS
  • Mission and Aransas NERR
  • Easterwood climate
  • NEON stage-discharge data

update officedown template

v 0.2.3 of officedown introduces some new chunk options that should probably be specified in the template:

  • support for knitr chunk options tab.topcaption and tab.lp.
  • support for knitr chunk options tab.cap.tnd, tab.cap.tns and tab.cap.fp_text that let define prefix for auto-number table captions. Same with fig.cap.tnd, fig.cap.tns and fig.cap.fp_text for plots.

latex template error

Occasionally get this error:

! LaTeX Error: Environment Shaded undefined.

Need to add the following to template.tex:

\makeatletter
\@ifundefined{Shaded}{
}{\renewenvironment{Shaded}{\begin{kframe}}{\end{kframe}}}
\@ifpackageloaded{fancyvrb}{%
  % https://github.com/CTeX-org/ctex-kit/issues/331
  \RecustomVerbatimEnvironment{Highlighting}{Verbatim}{commandchars=\\\{\},formatcom=\xeCJKVerbAddon}%
}{}
\makeatother

check warning

* checking for code/documentation mismatches ... WARNING
Warning: Data with usage in documentation object 'dissolved_oxygen' but not in code:

dotted gridlines overlap axis when expand argument is used

If the expand argument is used to eliminate the blank space between the axis and columns, the dotted gridlines overlap the axis lines. Need to ensure the theme is using the correct theme elements to specify the panel background and border.
image

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