Related Issues (20)
- For --keepfiles use FASTAID.suffix ?
- --outdir '.' and --force don't mix
- MSG: trunc start,end -- there was no end for 1 HOT 1
- Accidently trims whole sequence from 3967 bp => 0 bp HOT 1
- Filter out pacbio control sequence
- --help returns 1 not 0 HOT 1
- Add --check option to check deps
- Add --test option to help everyone
- check_deps() should check db/ too
- This should return the opposite
- Conda install doesn't exist HOT 1
- Remove bad Canu contigs eg. covStat<=0 or reads=1
- ctl.bls files not deleted
- Doesn't quite align to end and circ fails HOT 3
- Removing files messages should be --debug only
- Orient and rotate mitochondrial genome HOT 2
- berokka conda install has an issue with the Bio::SeqIO perl module HOT 1
- Error: NCBI C++ Exception: HOT 1
- Berokka conda installer is broken?
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