The current built and test status for Linux (Mac) and for Windows .

An association mapping method which jointly analyses all SNPs at once and at the same time accounts for the correlation between them. This makes correction for population structure unnecessary and therefore increases power compared to classical methods like the mixed model.

The package can be installed from an R console via devtools (If you haven't yet installed devtools please do so first).

# install.packages("devtools")
devtools::install_github("QTCAT/qtcat") 

The qtcatQtc-function example gives an overview of the functionality of the package and can be accessed once the package is loaded (please be aware, that running the example can take a few seconds).

library(qtcat)
example(qtcatQtc, run.dontrun = TRUE)

Also see the Arabidopsis example

© 2015 JR Klasen