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BioCore.jl provides core definitions that are common to all or many packages in the BioJulia ecosystem.

It also includes a definition of a common IO interface for IO of Bioinformatics formats in BioJulia packages, and includes some helper functions for generating file parsers from state machine automata with Automa.jl

BioCore is a dependency for other BioJulia packages, but you can install it yourself with:

using Pkg
add("BioCore")
#Pkg.add("BioCore") for julia prior to v0.7

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

BioCore.jl is tested against Julia 0.6 and current 0.7-dev on Linux, OS X, and Windows.

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We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features. Please go to the contributing section of the documentation for more information.

If you have a question about contributing or using this package, you are encouraged to use the Bio category of the Julia discourse site.