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hc_replay's Introduction

hc_replay

Hackathon project about hippocampal replay at MIND 2019

Documentation

At the moment, the documentation of this project is based on MkDocs. All corresponding files are located inside the docs folder. To view an interactive version of the documentation, please do the following:

  1. Install MkDocs by typing pip install mkdocs or following their installation guide
  2. Go into the repository folder on your local machine using cd
  3. Serve the documentation locally in your browser using mkdocs serve
  4. Copy the corresponding address of the local host (e.g., http://127.0.0.1:8000/) into your browser
  5. Enjoy the beautiful documentation!

If you edit the documentation files, the served documentation will automatically update! ๐Ÿ’ฅ

hc_replay's People

Contributors

devsubramanian avatar lemuelle avatar lnnrtwttkhn avatar matty-gee avatar mvdm avatar steelad avatar

Stargazers

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hc_replay's Issues

Identify theta cycles in real data

Given input LFP data, output iv with nice theta cycles

Possible workflow:

  • Filter LFP in theta band (FilterLFP())
  • Obtain power of signal
  • Threshold LFP to include only data with larger than some threshold theta power
  • Get theta cycle times

May be helpful to restrict data by running speed also -- only include data when animal is running so that we exclude SWRs and other things that have theta power in the LFP

Plot correlation matrices in time and space

Like this:

image

To be able to average across trials of different lengths, may need to:

  1. align to trial start, go length of shortest trial
  2. align to trial end, go back length of shortest trial
  3. bin time into some fixed number of bins

The metadata has trial start and end times.

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