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make-tom's Introduction

make-tom

make-tom-sh is a shell script for creating a TOM Toolkit-based TOM in a virtual environment. It's useful both as a way to spin up an "out-of-the-box" TOM for evaluation and as a reference for how to create a TOM for further customization and development.

Usage

The make-tom.sh script is all you need. Download it, make it executable (chmod +x make-tom.sh), and run it:

  ./make-tom.sh my_tom

This will create the directory my_tom in your current working directory with a virtural environment (my_tom/env) and TOM Toolkit (Django) project.

The basic workflow executed by the make-tom.sh script is:

  1. Create a Python virtual environment and activate it.
  2. From PyPI, install tomtoolkit and its dependencies (including Django) into the virtual environment.
  3. Use the django-admin startproject command to create a basic Django project.
  4. Add the one-time utility, tom_setup, to the basic Django project's settings.py INSTALLED_APPS list and run its tom_setup management command.

When the make-tom.sh script is finished, you'll see (for example) the following output:

Here is the directory we created:
/path/to/your/cwd//my_tom
.
├── data
├── db.sqlite3
├── manage.py
├── my_tom
│   ├── asgi.py
│   ├── __init__.py
│   ├── __pycache__
│   ├── settings.py
│   ├── urls.py
│   └── wsgi.py
├── static
├── templates
└── tmp

6 directories, 7 files

Next steps:
  1. cd to the new directory. 
  2. activate the virtual environment with 'source ./env/bin/activate'. 
  3. Start the Django development server with './manage.py runserver'. 
  4. Point a browser to the URL given by the 'runserver' management command.

Tips and Trouble-shooting

Here's a way to generate a uniquely named TOM, which can be useful when you repeatedly want to evaluate or experiment with something with the intention of deleting the directory when you're done:

./make-tom.sh name_of_your_tom_`date +'%Y%h%d_%0k%M'`

This will create a uniquely named TOM Toolkit directory called, for example, name_of_your_tom_2023Dec13_1751.

make-tom's People

Contributors

phycodurus avatar

Watchers

Mark Bowman avatar avatar Rachel Street avatar

make-tom's Issues

Testing make_tom under Mac OS

I cloned this repo to a new directory on my Macbook Pro, running macOS Sonoma v14.1.2. I'll paste the full output here for reference:

(base) Rachels-MacBook-Pro-2:make-tom rstreet1$ ./make-tom.sh my_tom
Checking for your installed Python...
Found Python 3.9.5 at /Users/rstreet1/opt/miniconda3/bin/python
Do you want to use the Python 3.9.5 at /Users/rstreet1/opt/miniconda3/bin/python?
-n Type 'yes' or the pathname of an alternative python executable: (yes/</path/to/python>)? [yes]
yes

Using Python 3.9.5 at /Users/rstreet1/opt/miniconda3/bin/python to create
create TOM: my_tom_2023Dec12_1532 in directory my_tom_2023Dec12_1532
-n Do you want to continue (y/n)? [n]:
y
Continuing...

Creating and activating the virtual environment...
Requirement already satisfied: pip in ./env/lib/python3.9/site-packages (21.1.1)
Collecting pip
Using cached pip-23.3.1-py3-none-any.whl (2.1 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 21.1.1
Uninstalling pip-21.1.1:
Successfully uninstalled pip-21.1.1
Successfully installed pip-23.3.1

Installing tomtoolkit and dependencies into the virtual environment...
Collecting tomtoolkit
Downloading tomtoolkit-2.15.14-py3-none-any.whl.metadata (5.9 kB)
Collecting astroplan<0.10,>=0.8 (from tomtoolkit)
Using cached astroplan-0.9.1.tar.gz (140 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting astropy<6,>=3 (from tomtoolkit)
Using cached astropy-5.3.4-cp39-cp39-macosx_10_9_x86_64.whl.metadata (9.4 kB)
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Collecting pyerfa>=2.0 (from astropy<6,>=3->tomtoolkit)
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Collecting PyYAML>=3.13 (from astropy<6,>=3->tomtoolkit)
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Collecting packaging>=19.0 (from astropy<6,>=3->tomtoolkit)
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Collecting html5lib>=0.999 (from astroquery<1->tomtoolkit)
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Collecting keyring>=4.0 (from astroquery<1->tomtoolkit)
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Collecting prometheus-client>=0.2 (from dramatiq<2.0.0->dramatiq[redis,watch]<2.0.0->tomtoolkit)
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Collecting idna<4,>=2.5 (from requests<3->tomtoolkit)
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Collecting urllib3<3,>=1.21.1 (from requests<3->tomtoolkit)
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Collecting gevent>=1.1 (from watchdog-gevent->dramatiq[redis,watch]<2.0.0->tomtoolkit)
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Building wheels for collected packages: astroplan, gevent
Building wheel for astroplan (pyproject.toml) ... done
Created wheel for astroplan: filename=astroplan-0.9.1-py3-none-any.whl size=84452 sha256=e75526f24f4c51c45237d874e3602a5a47cce4b12ca140a4732459275e437418
Stored in directory: /Users/rstreet1/Library/Caches/pip/wheels/39/1b/48/c16a7d8d98ef5c6a48d5918e5d7c251f3d34ae824d8c44c206
Building wheel for gevent (pyproject.toml) ... done
Created wheel for gevent: filename=gevent-23.9.1-cp39-cp39-macosx_10_9_x86_64.whl size=1728548 sha256=d3538500c57ab4670f11cfc7cd086f674a901f486891aba0398f335cc270cffb
Stored in directory: /Users/rstreet1/Library/Caches/pip/wheels/1e/b0/a7/4459144053368c44fa92e2b562d03105171c1fc542128a89f8
Successfully built astroplan gevent
Installing collected packages: webencodings, pytz, django-gravatar2, zope.interface, zope.event, zipp, watchdog, urllib3, typing-extensions, tenacity, sqlparse, soupsieve, six, semantic-version, PyYAML, prometheus-client, pillow, packaging, numpy, more-itertools, jmespath, idna, greenlet, charset-normalizer, certifi, attrs, async-timeout, asdf-standard, scipy, requests, redis, python-dateutil, pyerfa, plotly, jaraco.classes, importlib-metadata, html5lib, gevent, dramatiq, beautifulsoup4, asgiref, asdf-unit-schemas, asdf-transform-schemas, watchdog-gevent, markdown, keyring, django, astropy, asdf-wcs-schemas, asdf, pyvo, fits2image, djangorestframework, django-guardian, django-filter, django-extensions, django-dramatiq, django-crispy-forms, django-contrib-comments, django-bootstrap4, astroplan, asdf-coordinates-schemas, crispy-bootstrap4, astroquery, asdf-astropy, gwcs, ndcube, specutils, tomtoolkit
Successfully installed PyYAML-6.0.1 asdf-3.0.1 asdf-astropy-0.5.0 asdf-coordinates-schemas-0.2.0 asdf-standard-1.0.3 asdf-transform-schemas-0.4.0 asdf-unit-schemas-0.1.0 asdf-wcs-schemas-0.3.0 asgiref-3.7.2 astroplan-0.9.1 astropy-5.3.4 astroquery-0.4.6 async-timeout-4.0.3 attrs-23.1.0 beautifulsoup4-4.12.2 certifi-2023.11.17 charset-normalizer-3.3.2 crispy-bootstrap4-2023.1 django-4.2.8 django-bootstrap4-23.2 django-contrib-comments-2.2.0 django-crispy-forms-2.1 django-dramatiq-0.11.6 django-extensions-3.2.3 django-filter-23.5 django-gravatar2-1.4.4 django-guardian-2.4.0 djangorestframework-3.14.0 dramatiq-1.15.0 fits2image-0.4.7 gevent-23.9.1 greenlet-3.0.2 gwcs-0.20.0 html5lib-1.1 idna-3.6 importlib-metadata-7.0.0 jaraco.classes-3.3.0 jmespath-1.0.1 keyring-24.3.0 markdown-3.5.1 more-itertools-10.1.0 ndcube-2.2.0 numpy-1.24.4 packaging-23.2 pillow-10.1.0 plotly-5.18.0 prometheus-client-0.19.0 pyerfa-2.0.1.1 python-dateutil-2.8.2 pytz-2023.3.post1 pyvo-1.4.2 redis-5.0.1 requests-2.31.0 scipy-1.11.4 semantic-version-2.10.0 six-1.16.0 soupsieve-2.5 specutils-1.12.0 sqlparse-0.4.4 tenacity-8.2.3 tomtoolkit-2.15.14 typing-extensions-4.9.0 urllib3-2.1.0 watchdog-3.0.0 watchdog-gevent-0.1.1 webencodings-0.5.1 zipp-3.17.0 zope.event-5.0 zope.interface-6.1

Creating the base Django project...

Configuring the sqlite3 database for the base Django project...
Operations to perform:
Apply all migrations: admin, auth, contenttypes, sessions
Running migrations:
Applying contenttypes.0001_initial... OK
Applying auth.0001_initial... OK
Applying admin.0001_initial... OK
Applying admin.0002_logentry_remove_auto_add... OK
Applying admin.0003_logentry_add_action_flag_choices... OK
Applying contenttypes.0002_remove_content_type_name... OK
Applying auth.0002_alter_permission_name_max_length... OK
Applying auth.0003_alter_user_email_max_length... OK
Applying auth.0004_alter_user_username_opts... OK
Applying auth.0005_alter_user_last_login_null... OK
Applying auth.0006_require_contenttypes_0002... OK
Applying auth.0007_alter_validators_add_error_messages... OK
Applying auth.0008_alter_user_username_max_length... OK
Applying auth.0009_alter_user_last_name_max_length... OK
Applying auth.0010_alter_group_name_max_length... OK
Applying auth.0011_update_proxy_permissions... OK
Applying auth.0012_alter_user_first_name_max_length... OK
Applying sessions.0001_initial... OK

Adding tom_setup to the settings.py INSTALLED_APPS list...
sed: -e: No such file or directory

Running the one-time tom_setup management command...
Unknown command: 'tom_setup'
Type 'manage.py help' for usage.

Configuring the sqlite3 database for TOMToolkit...
Operations to perform:
Apply all migrations: admin, auth, contenttypes, sessions
Running migrations:
No migrations to apply.

Here is the directory we created:
/Users/rstreet1/software/make_tom_test/make-tom/my_tom_2023Dec12_1532
./make-tom.sh: line 154: tree: command not found

Next steps:

  1. cd to the new directory.
  2. activate the virtual environment with 'source ./env/bin/activate'.
  3. Start the Django development server with './manage.py runserver'.
  4. Point a browser to the URL given by the 'runserver' management command.
    (base) Rachels-MacBook-Pro-2:make-tom rstreet1$

Tom "date_time" should be optional

I understand how useful including a date-time stamp is for testing purposes, but most people will not want expect that when they type

./make-tom.sh awesome_tom

that they will get awesome_tom_random_datetime instead.

This seems to happen by default for me, even though it is implied in the Readme that it will only be the name I input.

This is further implied by the instructions for how to add a datetime to the name at the end of the readme.

Error and failure handling

The "next steps" should only be displayed if everything was properly installed and the setup worked.
We should have some kind of notification if any stage of the script failed to operate as expected.

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