Comments (2)
Hi @m-noonan, I do not see an issue here. There should be one line for every cell / sample in your data - ordered by the fraction values of the first transcript on the left side of the plot.
If there is a "blank" line, either the expression fraction is 0 - or the cell / sample has in general no expression of that gene, and therefore no fractions at all.
Hope this makes the visualization more clear.
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@TobiTekath Yes this helps, thank you! Is there some way to condense it? Also, in regards to my second question before, where can I find the "proportions" (mean proportion fit per subgroup (red line value) information used for this plotting?
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Related Issues (20)
- plot_transcripts_view() error: subscript contains invalid names HOT 3
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