ncdDetect2 contains functions for calling driver regions based on somatic mutation data. For documentation see http://moma.ki.au.dk/ncddetect/
To install the R-package directly from github use
devtools::install_github("TobiasMadsen/ncdDetect2")
Analysis of the missing explanatory variables of the cancer mutation process and improved driver detection (in preparation)
Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate, Malene Juul et al., eLife 2017