Behavioural neuroscience data wrangling and analysis tools

Execute the following from the project folder in a shell with conda on the path:

conda env create -f environment.yaml
conda activate behapy
pip install -e .

There is a MedPC event reading example in the examples subfolder. This example by default assumes MedPC data files are in the same folder as the notebook file.

Convert TDT source data to BIDS-like raw data format:

tdt2bids [session_fn] [experiment_fn] [bidsroot]

Open the preprocessing dashboard and confirm rejected regions of the recording:

ppd [bidsroot]

Write the preprocessed data to the derivatives/preprocess tree:

preprocess [bidsroot]

behapy is maintained by Chris Nolan.

This project would not exist without the energetic contributions from folks in the BrainHack community. Thanks in particular to:

• Thomas Burton
• Karly Turner
• Phil JRDB
• Dylan Black
• Ilya Kuzovkin
• Daniel Naoumenko
• Almudena Ramirez
• Joanne Gladding
• Lydia Barnes
• J Bertran-Gonzalez