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.github

Default GitHub community health files

2018-03-22-tripython-itk-jupyter-widgets

http://trizpug.org/Members/cbc/mar-18-mtg

2019-03-13-krscourseinbiomedicalimageanalysisandvisualization

Kitware Course in Biomedical Image Analysis and Visualization: ITK

agave

allen-ccf-itk-vtk-zarr

Visualization of the Allen Mouse Common Coordinate Framework brain atlas with itk.js, vtk.js, and zarr.

als-user-meeting-2024

Modern, open source microCT methods to enhance accessibility, scalability, and reproducibility

anari-docs

ANARI Documentation

anari-sdk

ANARI SDK

android-cmake

CMake toolchain file and other scripts for the Android NDK

anomalousdiffusionfilters

Repository to code and documentation of Anomalous Diffusion Filter Module (Insight-Journal)

ants

Advanced Normalization Tools (ANTs)

antswasm

applauncher

This project intends to provide a simple and small program allowing to preload all shared libraries and also set the environment of any executable.

ardent

Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.

awesome-cmake

A curated list of awesome CMake scripts, modules, examples and others.

awesome-jupyter

A curated list of awesome Jupyter projects, libraries and resources

awesome-open-science-software

awesome open list of pointers about open science for software and computational science

binaryen

Compiler infrastructure and toolchain library for WebAssembly

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioimageio-chatbot

Chatbot to retrieve information to response to users' query about the BioImage Model Zoo.

blog

Zarr Official Blog

bone-segmentation

Source code behind the paper Fully automatic and fast segmentation of the femur bone

book-theme

Simple site for displaying multiple articles and notebooks with a table of contents.

braintumorvisualization

brats-reg-elastix

breathelink

A sphinx extension that simultaneously calls the breathe extension and the doxylink extension.

build-image

This is the build image used for running automated builds

c-blosc

A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`.

cardiacultrasoundphaseestimation

This repository contains an image-based instantaneous phase estimation method for gating and temporal super-resolution of cardiac ultrasound

castxml

C-family Abstract Syntax Tree XML Output