Comments (1)
Hi @stemangiola,
We haven't set up the pipeline to be able to do that. What you could however do is fork the scib
repository and then edit the hvg_batch
function to always output a pre-defined gene list, see:
https://github.com/theislab/scib/blob/ad40b62d4c8b3a5712ef2bc46853588a2b8cf149/scib/preprocessing.py#L465
Hope that helps!
from scib-pipeline.
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