Giter Club home page Giter Club logo

bfo-2020's Introduction

Basic Formal Ontology

This repository maintains the Basic Formal Ontology (BFO) artifact conformant to the requirements specified in ISO/IEC 21838โ€‘1 for top-level ontologies. BFO contains classes and relations representing content common to all areas of scientific investigation, e.g. object, process, etc. and is used as a top-level architecture by numerous ontologies in the Open Biomedical and Biomedical Ontologies (OBO) Foundry, the Industrial Ontologies Foundry (IOF), and the Common Core Ontologies suite. Ontologies conformant to BFO promote interoperability, standardization, and reuse among domain-level ontologies.

The most current version is the "bfo-core.owl" file located at in this repository at: src/owl/bfo-core.owl

Directory Structure

  • documentation
    • axiomatization pdfs - Contains first-order axiomatizations of BFO sub-theories stored in PDF, such as: continuant-mereology.pdf
    • FAQ - Contains guidance for contributing to this repository, using Github workflows, and so on.
    • images - Contains images used in this repository.
    • user guides - Contains user guides for: ontology developers, software developers and subject matter experts.
  • src
    • owl - Contains the Web Ontology Language (OWL) implementation of BFO: bfo-core.owl.
    • common logic - Contains the Common Logic Interchange Format (CLIF) implementation of BFO separated into files representing sub-theories of BFO, such as: material-entity.cl .
    • prover9 - Contains an implementation of BFO that is readable by the Prover9 automated theorem prover, separated into files representing sub-theories of BFO, such as: temporal-region.prover9.
    • sparql - Contains quality control checks written in the SPARQL Protocol and RDF Query Language (SPARQL) which are used to ensure updates to bfo-core.owl do not violate design principles, such as having exactly one skos:prefLabel per language: exactly_1_prefLabel_per_lang.sparql.
  • temporal extensions - Contains R&D project extending bfo-core.owl to stronger representations of time, as well as supplementary documentatin supporting such extensions.

Versioning and Release Chart

BFO Releases

License

These documents are licensed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) license: https://creativecommons.org/licenses/by/4.0/ . The most current version of these files will be at https://github.com/BFO-ontology/BFO-2020

Documentation

For further documentation concerning this repository, see the BFO Documentation Page.
For further information about building ontologies using BFO artifacts and strategies, see Building Ontologies with Basic Formal Ontology.
For example BFO design patterns, see the article Basic Formal Ontology: Case Studies.
For information about upcoming and past BFO events, see NCOR.

Development Team

  • Barry Smith, SUNY Distinguished Professor of Philosophy and Julian Park Chair, University at Buffalo, Department of Philosophy
  • Alan Ruttenberg, Director of Clinical and Translational Data Exchange, University at Buffalo
  • John Beverley, Assistant Professor, University at Buffalo

Basic Formal Ontology Hierarchy

graph LR
    A(Entity):::BFO --> B(Continuant)
    B(Continuant):::BFO --> D(Specifically Dependent<br> Continuant)
    B(Continuant) --> E(Generically Dependent<br> Continuant):::BFO
    B(Continuant) --> F(Independent<br> Continuant)
    F(Independent<br> Continuant):::BFO --> G(Material Entity)
    F(Independent<br> Continuant) --> H(Immaterial<br> Entity)
    D(Specifically Dependent<br> Continuant):::BFO --> I(Quality)
    D(Specifically Dependent<br> Continuant) --> J(Realizable<br> Entity):::BFO
    I(Quality):::BFO --> K(Relational<br> Quality):::BFO
    J(Realizable<br> Entity):::BFO --> L(Role):::BFO
    J(Realizable<br> Entity) --> M(Disposition):::BFO
    M(Disposition) --> N(Function):::BFO
    H(Immaterial<br> Entity):::BFO --> O(Site):::BFO
    H(Immaterial<br> Entity) --> P(Spatial<br> Region):::BFO
    H(Immaterial<br> Entity) --> Q(Continuant Fiat<br> Boundary):::BFO
    Q(Continuant Fiat<br> Boundary):::BFO --> R(Fiat<br> Point):::BFO
    Q(Continuant Fiat<br> Boundary) --> S(Fiat<br> Surface):::BFO
    Q(Continuant Fiat<br> Boundary) --> T(Fiat<br> Line):::BFO
    P(Spatial<br> Region):::BFO --> VD(Zero-Dimensional<br> Spatial Region):::BFO
    P(Spatial<br> Region):::BFO --> U(One-Dimensional<br> Spatial Region):::BFO
    P(Spatial<br> Region):::BFO --> V(Two-Dimensional<br> Spatial Region):::BFO
    P(Spatial<br> Region):::BFO --> W(Three-Dimensional<br> Spatial Region):::BFO
    G(Material<br> Entity):::BFO --> X(Fiat Object Part):::BFO
    G(Material<br> Entity):::BFO --> Y(Object<br> Aggregate):::BFO
    G(Material<br> Entity):::BFO --> Z(Object):::BFO
    A(Entity):::BFO --> C(Occurrent):::BFO
    C(Occurrent):::BFO --> AA(Process):::BFO
    C(Occurrent) --> AB(Process<br> Boundary):::BFO
    C(Occurrent) --> AC(Temporal<br> Region):::BFO
    C(Occurrent) --> AD(Spatiotemporal<br> Region):::BFO
    AA(Process):::BFO --> AE(History):::BFO
    AC(Temporal<br> Region):::BFO --> AF(Zero-Dimensional<br> Temporal Region):::BFO
    AC(Temporal<br> Region) --> AI(One-Dimensional<br> Temporal Region):::BFO
    AF(Zero-Dimensional<br> Temporal Region):::BFO --> AG(Temporal<br> Instant):::BFO
    AI(One-Dimensional<br> Temporal Region):::BFO --> AH(Temporal<br> Interval):::BFO

    classDef BFO fill:#F5AD27,color:#060606

bfo-2020's People

Contributors

johnbeve avatar alanruttenberg avatar rorudn avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.