conda env create -n scRNA_seq -f env.yml && conda activate scRNA_seq
Raw data can be obtained from the Gene Expression Omnibus (GEO) at NCBI with accession number GSE148032.
Scripts for data preprocessing pipeline are located in the "Scripts" directory. Paths in the scripts need to be changed as necessary before running the pipeline.
- Seurat (v3.0.0)
- Monocle (v2.10.1)
- pyscenic (v0.9.19)
- Cytoscape (v3.7.1)
Feel free to submit an issue or contact us at [email protected] for problems about this project.