stevemussmann / comp-d_mpi Goto Github PK

Hello, in my analyses all three methods (d, p, f) gave results of D and Z in opposite values. In other words, positive D statistics with negative Z scores, and negative D with positive Z scores. Since the null expectation is D=0, I think Z and D should be of the same sign. Could you please explain why this is not the case? Thanks.

Hi I'm trying to get this software installed on my PC running Ubuntu and I can't compile. After downloading the source code and running autoreconf in the directory, I get the following message when I run ./configure:

checking whether the Boost::Program_Options library is available... no

I've tried several ways to install the Boost libraries including:

sudo apt-get install libboost-dev libboost-program-options-dev libmpich2-dev autotools-dev autoconf (which fails)
Reading package lists... Done
Building dependency tree
Reading state information... Done
E: Unable to locate package libmpich2-dev

and

sudo apt-get install libboost-dev libboost-program-options-dev libmpich-dev autotools-dev autoconf (which apparently works but then I run ./configure again and gives me the same message)

checking whether the Boost::Program_Options library is available... no

If I assume this message isn't an error and I proceed with make then I get the following:

Making all in src
make[1]: Entering directory '/home/biologistico/Comp-D_MPI-master/src'
/home/biologistico/miniconda2/bin/x86_64-conda_cos6-linux-gnu-c++ -DPACKAGE_NAME="compDmpi" -DPACKAGE_TARNAME="compdmpi" -DPACKAGE_VERSION="1.0" -DPACKAGE_STRING="compDmpi\ 1.0" -DPACKAGE_BUGREPORT="[email protected]" -DPACKAGE_URL="" -DPACKAGE="compdmpi" -DVERSION="1.0" -I. -Wall -std=c++11 -O3 -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/biologistico/miniconda2/include -fvisibility-inlines-hidden -std=c++17 -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/biologistico/miniconda2/include -MT compDmpi-dstat_main.o -MD -MP -MF .deps/compDmpi-dstat_main.Tpo -c -o compDmpi-dstat_main.o test -f 'dstat_main.cpp' || echo './'dstat_main.cpp
dstat_main.cpp:23:10: fatal error: boost/math/distributions/chi_squared.hpp: No such file or directory
#include <boost/math/distributions/chi_squared.hpp>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:594: compDmpi-dstat_main.o] Error 1
make[1]: Leaving directory '/home/biologistico/Comp-D_MPI-master/src'
make: *** [Makefile:353: all-recursive] Error 1

I'm at a loss and don't know what's wrong and where. Thanks in advance for your help.