Comments (2)
@maxybck We are making some significant improvements to the differential expression analysis so I will leave this issue open and update you when these improvements are completed.
Typically the most relevant ("driving") genes are found toward the top-left corner of the volcano plot (high LFC, strong support); it is unclear if a single ranking method will work well generally.
For customizing the volcano plot you would modify the ggplot_call
argument to volcano_plot
. The default setting is volcano_plot_ggplot_call
. If you run print(volcano_plot_ggplot_call)
this will give you the code which you can of course adapt. Hope that helps.
from fasttopics.
@maxybck Just so you know we have made improvements to the differential expression analysis and you can see the vignette for an illustration of how it works.
from fasttopics.
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