Comments (6)
Hi @NicoloPecco thanks for your interest in fastTopics. This function has been removed; please use de_analysis
instead. (Sorry, the vignettes have not been updated accordingly.)
from fasttopics.
Thanks!
dfa_out <- de_analysis(fit,counts) works.
Can you please provide the last part of the vignettes for the usage with the de_analysis function?
Thanks,
Nicolo
from fasttopics.
Yes, I need to update the vignnette. I'll leave this ticket open as a reminder to do this.
from fasttopics.
Hi, this is just a new reminder 🙏😅
Thank you,
Nicolo
from fasttopics.
Thanks for the reminder, Nicolo. It is near the top of my to-do list.
from fasttopics.
@NicoloPecco I've updated the vignettes finally. I apologize for the long delay.
from fasttopics.
Related Issues (20)
- Geting Help for FastTopics Error HOT 5
- function error-diff_count_clusters() & diff_count_analysis() HOT 2
- Contract topics feature HOT 2
- Curious about how fast is the CD algorithm compared to SQUAREM HOT 2
- Feature request: multi-threaded DE analysis HOT 14
- de_analysis using LDA Topic Modeling HOT 6
- de_analysis save intermediate steps + return likelihood optimization requests HOT 19
- Flip columns of X in poisson2binom (branch:poisson2binom)
- Improve documentation for parallel computing options HOT 10
- A question on the paper on differentiation expression HOT 3
- fastTopics on normalized data HOT 3
- Type I error control for homogenous case HOT 2
- Add more colors to structure_plot HOT 2
- Error in verify.fit.and.count.matrix(X, fit) : Dimensions of input matrices "X" , "fit$F" and "fit$L" do not agree HOT 4
- Allow "fit" argument to structure_plot to also be an "L" matrix, similar to de_analysis. HOT 1
- Considerations for bulk RNAseq HOT 2
- Feature request: early stopping HOT 5
- What is a sensible threshold to select the most informative features per topic? HOT 2
- Segmentation fault in multithreading setup HOT 8
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