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miniwdl

Workflow Description Language developer tools & local runner

mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

ncbi_trinity_parse

parse sra files to allow trintiy assembly

neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

nextflow

A DSL for data-driven computational pipelines

nf_towertest

paigep_sql

pbsuite-dockerfile

peptide-shaker

Interpretation of proteomics identification results

peptideshaker

Docker PeptideShake + SearchGui

plotlydash-flask-tutorial

📊📉Source code for the accompanying tutorial.

primer4hugbuild

Validating mutations without the pain

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pysamcloudchunker

pysamonawsbams

pysradb

Package for fetching metadata and downloading data from SRA

python-tkinter-minesweeper

Minesweeper game written in Python using Tkinter GUI library.

quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

react-alignment-viewer

📊 A React component to interactively view multiple sequence alignments (MSA).

repeatmodeler

retromasterdoktorandenhug

ru

Read Until scripts

samplot

Plot structural variant signals from many BAMs and CRAMs

samtoolsmultiproc

seq-scripts

scripts for sequence and feature conversion, annotation, analysis ...

sourmash

Compute and compare MinHash signatures for DNA data sets.

spimagine

GPU accelerated volume rendering / processing in Python

stephanholgerd.github.io

stringtie_docker

a dockerfile for stringtie