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ab1_to_igv

alv

A console-based alignment viewer

arduino-esp8266-nodemcu

A collection of simple Arduino examples for using NodeMCU (ESP8266) within the Arduino programming environment (IDE).

arriba

Fast and accurate gene fusion detection from RNA-Seq data

autocasc

AutoCaSc is a tool for evaluating deleteriousness of genomic variants found in Trio Exome Sequencing in cases of neurodevelopmental disorders (NDD).

bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

basicsnake

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

binder_r_tutorial

bioinformatics-training

Bioinformatics training resources

biojs

🔬A library of JavaScript components to represent biological data

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

braker

BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

canu

A single molecule sequence assembler for genomes large and small.

clinvardancingbars

color_igv

colormap

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cyberchef

The Cyber Swiss Army Knife - a web app for encryption, encoding, compression and data analysis

dash-bio

Open-source bioinformatics components for Dash

dask-tutorial

Dask tutorial

dbg2olc

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dna_module_1

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

drukbam

esp8266_deauther

Cheap WiFi hacks

eve_info