Related Issues (20)
- Normalization method (scaling) HOT 9
- for SE save internals within the metadata rather than attributes.
- github action mac fail HOT 1
- DEG Analysis Between Single Group with Multiple Groups HOT 6
- "Proportion of variance explained" values on reduce_dimensions() output HOT 1
- github actions give preflight error for the whole tidy stack HOT 1
- ERROR; return code from pthread_create() is 22 HOT 3
- pathway analysis using tidybulk HOT 8
- Design and contrasts for tidybulk test differential abundance function HOT 9
- Remove batch effect in test_differential_abundance
- Warning in CHECK, mistery
- Improve the documentation for `tidybulk` HOT 29
- turn pseudobulk from scRNAseq with logCPM value back to a seurat object with counts value? HOT 2
- `tidybulk` Remove hard dependency for `DESeq2` HOT 12
- in `test_gene_rank` check if any feature is NA, because pivot_feature will fail
- the attribute "internals" $ tt_columns abundance_scaled, carries the environment with it inflating the RDS file size
- Prepare for upcoming Seurat v5 release
- Add the method to simplify complete confounders is they are not factor of interest
- limma:MakeContrasts integration issues HOT 2
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