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matrix.utils

mintmap

This is the code repository, to download MINTmap for basic usage please visit our website at

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mono_dense2sparse

multi_subset_bam

A Rust way to subset a bam based on an bam internal key

nf-core-mitotag

ngscollation

A R project to group several NGS datasets (StefansExpressionSet) for a hypothesis generating analysis.

ngsexpressionset

numbat_singularity

oldstefanslibs

This is my old perl library that I later on have split up into several working parts. This is just a personal resource - do not clone or use it ;-)

ongoing_work

r-install-dependencies

A script for gathering and installing dependency packages for an R project in the case that external http(s) requests cannot be made.

r_usagetutorial_1

To use R means to program scripts in R. You will learn how to use basic R data structures like vector, list and factor as well as matrix and data.frame.

rcpptestarea

reanalyze_sra

This package can be used to re-analyze next generation sequencing data stored in the NCBI sra archive.

rfclust.sge

R random forest clustering using a sun grid engine backend.

rscexv

The new SCExV R backend (S4)

rust_primer_kmeans

Buld a simple kmeans algorithm in Rust.

rust_programming_1

rustody

BD rhapsody sample splitting preprocessing

rustysparsemmx

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

scanpyautoanalyzer

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

scexv

SCexV: a webtool for the analysis and visualisation of single cell qRT-PCR data

scexv_installation_scripts

This repository contains my list of woring SCExV installation scripts and a expample of how to use them.

scexv_sge_frontend

The server that provides the SGE frontend for the SCExV server

scexv_snap

The snap package for the SCExV server to run under ubuntu core

simulated_annealing

singelcellsam