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License: BSD 3-Clause "New" or "Revised" License
Excellent question received by email: running isotope-guided-walk.R
leads to an error on line 123:
Error in calRaster(known = d, isoscape = d18o_world) :
object 'd18o_world' not found
Update pending and commit to follow
Background: It wasn't clear if folx would actually use this functionality for their own work or just to reproduce the paper, and so I didn't make this method a full blown R
package. However, given issue #1 regarding versions of packages, I'm pasting here my sessionInfo()
. Can confirm that isotope-guided-walk.R
runs start-to-finish with this.
R version 4.1.0 (2021-05-18)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 11.5
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] assignR_1.2.1 rgeos_0.5-5 spatstat_2.2-0 spatstat.linnet_2.3-0 spatstat.core_2.3-0
[6] rpart_4.1-15 nlme_3.1-152 spatstat.geom_2.2-2 spatstat.data_2.1-0 readxl_1.3.1
[11] data.table_1.14.0 broom_0.7.8 gridExtra_2.3 colorspace_2.0-2 colorRamps_2.3
[16] fossil_0.4.0 shapefiles_0.7 foreign_0.8-81 mixtools_1.2.0 rasterVis_0.50.3
[21] latticeExtra_0.6-29 lattice_0.20-44 terra_1.3-4 maptools_1.1-1 maps_3.3.0
[26] raster_3.4-13 rgdal_1.5-23 sp_1.4-5 magrittr_2.0.1 ggpubr_0.4.0
[31] forcats_0.5.1 stringr_1.4.0 dplyr_1.0.7 purrr_0.3.4 readr_2.0.0
[36] tidyr_1.1.3 tibble_3.1.3 ggplot2_3.3.5 tidyverse_1.3.1
loaded via a namespace (and not attached):
[1] deldir_0.2-10 ggsignif_0.6.2 ellipsis_0.3.2 rio_0.5.27 rprojroot_2.0.2
[6] fs_1.5.0 rstudioapi_0.13 hexbin_1.28.2 remotes_2.4.0 bit64_4.0.5
[11] fansi_0.5.0 lubridate_1.7.10 xml2_1.3.2 codetools_0.2-18 splines_4.1.0
[16] cachem_1.0.5 polyclip_1.10-0 pkgload_1.2.1 jsonlite_1.7.2 kernlab_0.9-29
[21] dbplyr_2.1.1 png_0.1-7 spatstat.sparse_2.0-0 compiler_4.1.0 httr_1.4.2
[26] backports_1.2.1 assertthat_0.2.1 Matrix_1.3-4 fastmap_1.1.0 cli_3.0.1
[31] prettyunits_1.1.1 tools_4.1.0 gtable_0.3.0 glue_1.4.2 Rcpp_1.0.7
[36] carData_3.0-4 cellranger_1.1.0 vctrs_0.3.8 ps_1.6.0 openxlsx_4.2.4
[41] testthat_3.0.4 rvest_1.0.0 lifecycle_1.0.0 devtools_2.4.2 goftest_1.2-2
[46] rstatix_0.7.0 MASS_7.3-54 zoo_1.8-9 scales_1.1.1 vroom_1.5.3
[51] hms_1.1.0 spatstat.utils_2.2-0 RColorBrewer_1.1-2 curl_4.3.2 memoise_2.0.0
[56] segmented_1.3-4 stringi_1.7.3 desc_1.3.0 pkgbuild_1.2.0 zip_2.2.0
[61] rlang_0.4.11 pkgconfig_2.0.3 tensor_1.5 bit_4.0.4 processx_3.5.2
[66] tidyselect_1.1.1 R6_2.5.0 generics_0.1.0 DBI_1.1.1 mgcv_1.8-36
[71] pillar_1.6.1 haven_2.4.3 withr_2.4.2 survival_3.2-11 abind_1.4-5
[76] modelr_0.1.8 crayon_1.4.1 car_3.0-11 utf8_1.2.1 tzdb_0.1.2
[81] jpeg_0.1-9 usethis_2.0.1 grid_4.1.0 callr_3.7.0 reprex_2.0.0
[86] munsell_0.5.0 viridisLite_0.4.0 sessioninfo_1.1.1
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