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DOI

Cite this repository:

Ayan Kumar Saha, & Debabrata Acharya. (2020, July 28). kalyaniuniversity/mgx-datasets: Publicly available Microarray Gene Expression Datasets (Version 0.3). Zenodo. http://doi.org/10.5281/zenodo.3964223

mgx-datasets

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

LICENSE

Please note that even though this repository is free to use and modify under MIT License, but the individual datasets referenced here may be conducted under their own licencing terms.

Datasets

If we are keeping a copy of the dataset with this repository, it shall be available in the datasets folder of each named dataset. Please check the reference table below to find whether we keep a copy of the dataset uder the Dataset tab.

Toolkit

If we have written a toolset for a certain dataset, it shall be available under the toolkit folder of each named dataset. Please check the reference table below to find whether a certain dataset has any associated toolset under the Tools tab. Note that some of the preprocessing has also been done using our own preprocessing library pytoolkit available at (kalyaniuniversity/pytoolkit)[https://github.com/kalyaniuniversity/mgx-datasets].

REFERENCE TABLE

Microarray Gene Expression Dataset Reference Table
Sl. No. Name Reference Dataset Tools Notes
1 DLBCL Biolab DLBCL/FL DLBCL Toolkit -
2 GSE412 Biolab GSE412 (ChildALL) GSE412 Toolkit -
3 leukemia Biolab leukemia leukemia Toolkit -
4 MLL Biolab MLL MLL Toolkit -

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Contributors

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