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mutationfinder

Tools for the MutationFinder corpus (http://mutationfinder.sourceforge.net/)

ncbi-disease

NCBI disease corpus - related resources

nersuite

nxml2txt

NLM .nxml to text format conversion

onion-tools

Tools for text deduplication using the onion (ONe Instance ONly) tool

pdftools

Tools for working with PDF documents

pickanno

pmccite

Extract pretty-printed article citation from PMC .nxml file

predpatt

PredPatt: Predicate-Argument Extraction from Universal Dependencies

prodigy-register

Tools for register (genre) annotation with Prodigy

prodigy-relation-annotation

Supporting tools for relation annotation using Prodigy.

prodigy-sentiment

Sentiment annotation config and support for prodigy annotation

prodigy-tools

Tools for working with the prodigy annotation tool

prodigy-wiki-linking

Tools for entity linking annotation to wiki resources using prodigy

protein-synonym-generation

Generate "synonymous" sequences based on Interproscan data

ptb2conll

Convert PTB format into simple CoNLL-like format

ptb2oa

Convert Penn Treebank format into Open Annotation format.

pubannotation.py

Python library for PubAnnotation

pubmed

Tools for working with PubMed data.

pubtator

PubTator tools

pyhttp

Experiments with python HTTP server

pytorch-transformers

👾 A library of state-of-the-art pretrained models for Natural Language Processing (NLP)

recover-nonascii-characters

Special-case tool for recovering non-ASCII characters in malformed text

register-data-augmentation

Simple data augmentation scripts for text classification

restful-oa

RESTful Open Annotation

s800

Tools for working with the S800 corpus

s800-revision-data

Data for revision of S800 corpus (https://species.jensenlab.org/)

s800-revision-docs

sent2wordpiece

SentencePiece vocab to WordPiece vocab conversion

sentanno

Sentiment annotation tool