Comments (1)
freeman-lab
commented on June 9, 2024
Hey @0x00b1! Thanks so much for sharing, we hadn't seen skopy, and it looks like a really cool effort. This package starfish is currently pretty focused on prototyping a standard pipeline for image-based transcriptomics analysis, as opposed to a more general image processing / feature extraction / pipeline tool -- consider this a learning exercise to get us started.
We're also super interested in working on or helping to improve those kinds of more general tools. As we start to go in that direction, we'll definitely dig into skopy -- as well as all the other tools in this ecosystem, of course! -- and hopefully we can find a way to collaborate.
from starfish.
Related Issues (20)
- Quickstart and napari HOT 2
- Update open napari window? HOT 1
- Displaying example from data formatting tutorial HOT 3
- Include output in example notebooks HOT 2
- JOSS paper does not mention alternative tools
- JOSS MS comments HOT 1
- "ValueError: in1 and in2 should have the same dimensionality" when "is_volume=True" for Filter.DeconvolvePSF
- make install-dev got error
- 'Visualizing Data' tutorial crashes at viewer.add_image step HOT 3
- Tutorials making use of Napari should include screenshots of expected output. HOT 1
- Are the masks in the left in the tutorial really two cells? HOT 2
- JOSS paper should mention how starfish compares to the other available tools
- error importing scikit's 'match_histograms' HOT 2
- Link to raw data is not working HOT 2
- starfish is incompatible with Python 3.9 HOT 1
- AttributeError: 'DataArray' object has no attribute 'flags' in quick start run HOT 9
- Couldn't install without specifying an older version of scikit-image (0.17.2) HOT 5
- Update installation section in the README.rst and readthedocs.io
- ValueError when running BlobDetector HOT 2
- Unable to run dev install on Mac M2 HOT 1
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from starfish.