spacetx Goto Github PK
Type: Organization
Type: Organization
This repo includes scripts for segmenting spacetx data sets and mapping the results to a reference RNA-seq data set.
Conversion tool from biohub's DB format to spacetx format
Contains research projects related to image-based transcriptomics assays
Convert supported filesets to the SpaceTx format
SpaceTx website
Image data format specification for spaceTx
starfish: unified pipelines for image-based transcriptomics
Contains analyses executed using the starfish package
A web-based visualization for image based transcriptomics data
Solutions for running at-scale workflows with starfish
HumanCellAtlas upload-service validator for SpaceTx files
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