sosiristseng / sosiristseng.github.io Goto Github PK

using ModelingToolkit
using DifferentialEquations
using Plots

# Independent (time) and dependent (state) variables (x and RHS)
@variables t x(t) RHS(t)

# Setting parameters in the modeling
@parameters τ

# Differential operator w.r.t. time
D = Differential(t)

# Equations in MTK use the tilde character (`~`) as equality.
# Every MTK system requires a name. The `@named` macro simply ensures that the symbolic name matches the name in the REPL.

@named fol_separate = ODESystem([
    RHS  ~ (1 - x)/τ,
    D(x) ~ RHS
])

model = structural_simplify(fol_separate)

f = ODEFunction(model, jac=true)

f.jac

f([0.0], [1.0], 0.0)


u0 = [x => 0.0]
tspan = (0.0, 10.0)
param = [τ => 3.0]
prob = ODEProblem(model, u0, tspan, param)
sol = solve(prob)

Giscus integration

https://squidfunk.github.io/mkdocs-material/setup/adding-a-comment-system/

Add bookmarks

brave
vivaldi
edge
firefox

Change parameters from an ODE system

"""Change parameter(s) from an ODESystem and returns a parameter vector."""
function change_params(sys, ps...)
    ModelingToolkit.varmap_to_vars(Dict(ps), parameters(sys); defaults = sys.defaults)
end

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✅ Successful	792
⏳ Timeouts	0
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❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/code/python/index.md

[503] https://quantecon.org/quantecon-py | Failed: Network error: Service Unavailable
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🔍 Total	849
✅ Successful	789
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

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Errors in docs/code/python/index.md

[404] https://learnxinyminutes.com/docs/python3/ | Failed: Network error: Not Found
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Status	Count
🔍 Total	849
✅ Successful	789
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/code/python/index.md

[ERR] https://open.umn.edu/opentextbooks/textbooks/43 | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:2092: (certificate has expired)
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Status	Count
🔍 Total	852
✅ Successful	792
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/bookmarks/research.md

[ERR] https://vcell.org/ | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:2092: (unable to get local issuer certificate)
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Mambaforge deprecation

https://github.com/sosiristseng/progress/issues/134

Thorium browser

https://thorium.rocks/

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✅ Successful	792
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Link Checker Report

Summary

Status	Count
🔍 Total	852
✅ Successful	792
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/school/research-bookmarks.md

[ERR] https://vcell.org/ | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:2092: (unable to get local issuer certificate)
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Use tabs

jill.sh to install Julia

Using jill.sh to install Julia somehow avoids precompile cache invalidation in GitHub actions.

Status check for a multi-stage workflow

I can use the ${{ needs.<job>.result }} variable without setting output flags.

  # CI conclusion for GitHub status check
  # Adaped from https://brunoscheufler.com/blog/2022-04-09-the-required-github-status-check-that-wasnt
  CI:
    needs: render
    if: always()
    runs-on: ubuntu-latest
    steps:
      - run: |
          if [[ ${{ needs.render.result }} == "success" ]]; then
            echo "Tests passed"
            exit 0
          else
            echo "Tests failed"
            exit 1
          fi

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Status	Count
🔍 Total	852
✅ Successful	792
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/bookmarks/research.md

[ERR] https://vcell.org/ | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:2092: (unable to get local issuer certificate)
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Dependency Dashboard

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.

This repository currently has no open or pending branches.

Detected dependencies

github-actions

.github/workflows/linkcheck.yml

actions/checkout v4

actions/cache v4

lycheeverse/lychee-action v1.9.3

.github/workflows/pages.yml

actions/checkout v4

actions/setup-python v5

actions/configure-pages v4

actions/upload-pages-artifact v3

actions/deploy-pages v4

pip_requirements

requirements.txt

mkdocs-material ==9.5.7

mkdocs-git-revision-date-localized-plugin ==1.2.4

mkdocs-ezlinked-plugin ==0.3.3

mkdocs-callouts ==1.10.0

Check this box to trigger a request for Renovate to run again on this repository

robocopy

https://learn.microsoft.com/en-us/windows-server/administration/windows-commands/robocopy

Validate USB drive

https://www.grc.com/validrive.htm

Video Link: https://www.youtube.com/watch?v=xMgEHy1A9QA

rsync to NAS folder

rsync -avh --delete /source/folder/ suername@ip::dest/folder/

In the NAS, the rsync service and rsync users should be enabled.

Docker config

Move the Docker data directory to a bigger partition
Set up a pull-through cache (by Google) to avoid hitting the docker image access limit by Dockerhub

Edit /etc/docker/daemon.json, add the following entries

{
  "data-root": "/home/docker",
  "registry-mirrors": ["https://mirror.gcr.io"]
}

Then run

sudo service docker restart

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Status	Count
🔍 Total	851
✅ Successful	791
⏳ Timeouts	0
🔀 Redirected	0
👻 Excluded	59
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/school/research-bookmarks.md

[ERR] https://vcell.org/ | Failed: Network error: error:0A000086:SSL routines:tls_post_process_server_certificate:certificate verify failed:ssl/statem/statem_clnt.c:2092: (unable to get local issuer certificate)
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Status	Count
🔍 Total	852
✅ Successful	790
⏳ Timeouts	1
🔀 Redirected	0
👻 Excluded	60
❓ Unknown	0
🚫 Errors	1

Errors per input

Errors in docs/code/julia/index.md

[404] https://dev.to/ | Failed: Network error: Not Found

Errors in docs/code/web.md

[TIMEOUT] http://www.freedigitalphotos.net/ | Timeout
Full Github Actions output

Link Checker Report

Summary

Status	Count
🔍 Total	859
✅ Successful	790
⏳ Timeouts	1
🔀 Redirected	0
👻 Excluded	68
❓ Unknown	0
🚫 Errors	0

Errors per input

Errors in docs/code/python/python-bookmarks.md

[TIMEOUT] https://anaconda.org/conda-forge/repo | Timeout
Full Github Actions output

Sequence in MS Word

Sequence field: support.microsoft.com/en-us/office/field-codes-seq-sequence-field-062a387b-dfc9-4ef8-8235-29ee113d59be

Insert > Quick parts > Field

Press F9 to update field. Press Ctrl+ A (Select all) then F9 to update all fields.

sosiristseng / sosiristseng.github.io Goto Github PK

sosiristseng.github.io's Issues

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