sofroniewn Goto Github PK

napari-training-course

Lectures for a napari training course

napari-tutorials

tutorials for the napari image viewer

normal_mode_analysis

An normal mode analysis plugin based on OpenMM Simulation Objects

npe2

numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

openfold

Trainable PyTorch reproduction of AlphaFold 2

opticspy

python optics module

projects

Code Samples

projectweek

Website for NA-MIC Project Weeks

protein-viewer

Using matplotlib, VisPy and Panda3D for viewing proteins through their PDB archives

proto-skimage-widgets

psf

Compute microscopy point spread functions (psf)

pymus

Python for Medical Ultrasound

pytorch-segmentation

Image segmentation using deep networks

pyviz.org

Source for the PyViz.org website.

ray-to-line

ray-to-lines

redux-2afc

regional

simple manipulation and display of spatial regions in python

scikit-image

Image processing in Python

segmentify

Python image segmentation plugin

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

singlecelldetect

Module for detecting a single cell from an image

sketches

Scratch repo for arduino sketches

skimage-tutorials

skimage-tutorials: a collection of tutorials for the scikit-image package.

slicersimplefilters

A Module for Slicer3D to provide a simple GUI to image filters from the Insight Toolkit.

sofroniewn.github.io

Website

srlwtf

notebooks to accompany Simple Reinforcement Learning with Tensor Flow tutorials

svoboda-lab-legacy

Whisker guided navigation rig

tactile-coding

Notebooks to accompany sofroniew-vlasov-2015