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goatools

Python library to handle Gene Ontology (GO) terms

gr

gsea_analysis

gseapy

Gene Set Enrichment Analysis in Python

gseavis

An implement R package to visualize GSEA results

gwas

A pipeline for Genome Wide Association Studies

hcflow

Official PyTorch code for Hierarchical Conditional Flow: A Unified Framework for Image Super-Resolution and Image Rescaling (HCFlow, ICCV2021)

hdnom

Benchmarking and Visualization Toolkit for Penalized Cox Models

hgnchelper

Identify and correct invalid gene symbols

human-phenotype-ontology

Ontology for the description of human clinical features

i2vgen-xl

Official repo for VGen: a holistic video generation ecosystem for video generation building on diffusion models

icgc_rnaseq_align

imageenhancer

Image Enhancer to reduce noises, color image, or expand resolutions

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immuno_notes

Immunology-related bioinformatics data and tools

imogene

irgsea

The integration of single cell rank-based gene set enrichment analysis

kmergenerator

Generate all possible k-mers

labs

Rmd source files for the HarvardX series PH525x

learning_vcf_file

Learning the Variant Call Format

mapsplicersem-clean-doc

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

mergelanes

Merge fastq files split over lanes

metabworkflowtutorial

https://cimcb.github.io/MetabWorkflowTutorial/

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

microarraypipeline

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

mircancerdb

A database for microRNA-gene/protein expression correlation in cancer.

misctutorial

mlst

mutation-signatures

Create mutation signatures from MAF's, and decompose them into Stratton signatures