Sam Bogan's Projects
Just for kicks. Learning about statistics through the exploration of America's pastime.
Analysis of RNAseq and BSseq data from a quantitative genetic experiment on purple sea urchin larvae
Processing and analyses of whole genome bisulfite sequencing data from a study of purple urchin responses to abiotic stress
R code related to Bogan and Yi's review on epigenetic regulation of phenotypic plasticity
Analyses of relationships between parental environment, gene expression, and larval performance in purple urchins
A power analysis of sampling effort to detect indirect effects modeled using structural equations
Genome-scale mediation analyses for measuring indirect effects of the environment on expression via differential methylaion
QG animal model looking at effects of DNA methylation on additive genetic variance for gene expression in purple urchin
Figures for PBSE Fall 2023 conference
R code associated with a study of thermal plasticity's fitness costs and trade offs
A tutorial on executing a basic RNAseq -> differential expression pipeline
My website
Analyses combining ATAC-seq, RRBS, and RNA-seq data for purple urchins
Time series temperature data collected from suppralittoral pools across coastal California w/ code for filtering, wrangling, and exploring the data.
An analysis of red and purple sea urchin recruitment in response to temperature, and how that response changes over time