Svetlana Lebedeva's Projects
Predict electricity consumption on US households
My solutions to some puzzles of advent of code in python (only selected puzzles)
CI/CD template repo
ci-cd-example
a pipeline to map CLIP-seq data
Code to create figures for the CPEB4 manuscript (10.1186/s13059-022-02760-5).
Default configuration for Le Wagon's students
:books: Freely available programming books
Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
Pipeline to map reads from the infrared PAR-CLIP protocol
Code for Joung et al, Nature manuscript. Genome-scale Activation Screen Identifies a LncRNA Locus Regulating a Gene Neighborhood. Please note that the code is published as is for reference.
omniCLIP is a CLIP-Seq peak caller
An R package for Splice-aware quantification of translation using Ribo-seq data
Scripts and notebooks to analyze my own genome sequence.
Comprehensive Python Cheatsheet
my solutions for Python days of code WWcode challenge
R functions to process qpcr data from BioRad machine.
This is the Lab's standard Ribo-seq processing pipeline, a snakemake workflow and some R scripts.
Simple functions to solve Rosalind problems
Utilities to deal with sequencing data
Sheet music by slebedeva
A simple cv template written in LaTex
About me
Le Wagon exercise for user interface
A simple app version of the all-seeing magic eye that foretells your future
R shiny app to show gene expression in zebrafish tissues