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Hi šŸ‘‹, I'm Svetlana

An RNA biologist who likes to code

  • šŸ”­ Iā€™m currently working on predicting RNA stability

  • šŸŒ± Iā€™m currently learning Transformers

  • šŸ‘Æ Iā€™m looking to collaborate on ML projects in Bio

  • šŸ’¬ Ask me about RNA

  • šŸ“„ Know about my experiences

  • āš” Fun fact known cat lover

Connect with me:

svet_lebedeva svetlana-s-lebedeva

Languages and Tools:

docker gcp pandas python scikit_learn seaborn sqlite tensorflow

slebedeva

Svetlana Lebedeva's Projects

advent_of_code icon advent_of_code

My solutions to some puzzles of advent of code in python (only selected puzzles)

cpeb4_public icon cpeb4_public

Code to create figures for the CPEB4 manuscript (10.1186/s13059-022-02760-5).

dotfiles icon dotfiles

Default configuration for Le Wagon's students

lncrna_crispra_screen_joung_nat_2017 icon lncrna_crispra_screen_joung_nat_2017

Code for Joung et al, Nature manuscript. Genome-scale Activation Screen Identifies a LncRNA Locus Regulating a Gene Neighborhood. Please note that the code is published as is for reference.

orfquant icon orfquant

An R package for Splice-aware quantification of translation using Ribo-seq data

qpcr icon qpcr

R functions to process qpcr data from BioRad machine.

riboseq_pipeline icon riboseq_pipeline

This is the Lab's standard Ribo-seq processing pipeline, a snakemake workflow and some R scripts.

rosalind icon rosalind

Simple functions to solve Rosalind problems

the_magic_eye icon the_magic_eye

A simple app version of the all-seeing magic eye that foretells your future

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